PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621348.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 390aa    MW: 44530.3 Da    PI: 8.7303
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.47.6e-3446100155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  XP_013621348.1  46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 100
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.75543103IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-3144101IPR009057Homeodomain-like
SuperFamilySSF466895.91E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2346101IPR006447Myb domain, plants
PfamPF002494.5E-104899IPR001005SANT/Myb domain
PfamPF143793.5E-25147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MYYQNQHQGK SILSSSRMHL PSERHTFLRG GNSPGDSGLI LSIDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTIMKV MGIPGLTLYH LKSHLQKYRL SKNLNGQANI SLNKIGMMTM  120
MEEKSPDADE IQSESLSIGP QPNKNSPISE ALHMQIEVQR RLHEQLEVQR HLQLKIEAQG  180
KYLQSVLEKA QETLGKQNLG EAGLEAAKVH LSEFVSKVSA EYPNTSFLEQ KEFQNLCTQR  240
MQPPDFSLKS CLTSSERAQK NPKILENKLR TYLGDSTSEK KEPMFQRMEL TWTEGLRRNP  300
HLSTMVSDAE QRVSYSERSP ARLSIGVGMH GHRDHQQVNN EFKDERFKDK SEDHKIETQG  360
TTTELDLNTR VDNYCTTRPK QFDLNGFSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621348.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2220890.0HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621348.10.0PREDICTED: uncharacterized protein LOC106327671 isoform X1
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0D3AFP70.0A0A0D3AFP7_BRAOL; Uncharacterized protein
STRINGBo1g153240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]