PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621272.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 257aa    MW: 29125 Da    PI: 9.8836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.4e-241461249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie + n qvtfskR+ g++KKA+EL++LCda+va+i+fs++gk+y +
  XP_013621272.1 14 KIEKENNLQVTFSKRKDGLFKKANELCTLCDARVAIILFSPSGKMYSF 61
                    59999*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-33564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.852565IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-26676IPR002100Transcription factor, MADS-box
CDDcd002652.67E-32678No hitNo description
PRINTSPR004042.4E-20727IPR002100Transcription factor, MADS-box
PfamPF003194.7E-261461IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-202742IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-204263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRKTKGRQKI KMVKIEKENN LQVTFSKRKD GLFKKANELC TLCDARVAII LFSPSGKMYS  60
FGHTTVETII HQFESNDHPL NNPQPNMQLG EIHQNSTVRG LNNRLTEVMN NLESEQKKGE  120
ELKKLRKKSK IPETWLKESI GGLDLGQAKE FKDKLENLRK QVIYEAFKIF LATPFPHPGF  180
YGGSSSNAPF GVDGNVNAFD NHNMILPNHS SPFGNYSRIE GFVPRFNHNM ALPSHPNPNE  240
SGNEHPHDGH PPQPRSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-15679174Myocyte-specific enhancer factor 2A
3kov_B2e-15679174Myocyte-specific enhancer factor 2A
3kov_I2e-15679174Myocyte-specific enhancer factor 2A
3kov_J2e-15679174Myocyte-specific enhancer factor 2A
3p57_A2e-15679174Myocyte-specific enhancer factor 2A
3p57_B2e-15679174Myocyte-specific enhancer factor 2A
3p57_C2e-15679174Myocyte-specific enhancer factor 2A
3p57_D2e-15679174Myocyte-specific enhancer factor 2A
3p57_I2e-15679174Myocyte-specific enhancer factor 2A
3p57_J2e-15679174Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621272.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-68AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A0D3AKR10.0A0A0D3AKR1_BRAOL; Uncharacterized protein
STRINGBo2g024870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-58AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]