PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620812.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 349aa    MW: 38600.1 Da    PI: 8.1626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  XP_013620812.1 156 YQCKTCDRTFSSFQALGGHRASH 178
                     9***********99999998887 PP
2zf-C2H215.16.8e-05230252123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ F++   L  H+r+H
  XP_013620812.1 230 HECGICGEEFTSGQALGGHMRRH 252
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.7E-9155178No hitNo description
PfamPF139128.2E-12155180IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887156183IPR007087Zinc finger, C2H2
SMARTSM003550.034156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576678.7E-9225252No hitNo description
Gene3DG3DSA:3.30.160.604.9E-4228254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.3E-11229254IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305230254IPR007087Zinc finger, C2H2
SMARTSM003550.031230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLILKG KREKRQRSQS PVPFSISPPI VSCPSRDVEE EYTNLDSKEN  60
ALANNVGNHK KDGVITSSSS SASWSSNNNP TLKAEEDEED LDIASCLILL SQGHSLPQLK  120
IPNHETNNNN TYKFSSRRFL ETSSSNGGGK AGHYVYQCKT CDRTFSSFQA LGGHRASHKK  180
PKATSFYSNL DHLKKNIYEN DSLATTTTIY NNNKNRSLVV YGKAGNNKVH ECGICGEEFT  240
SGQALGGHMR RHRGAVVVAP TVTVTLAAAN TELSLSSMSF DQISTKRAKK MVVSLDLDLN  300
LPAPEYENRV NGFSLCFKQK HEQEHQQTKQ RDEPKCLVLS PPTLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893880.0AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620812.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D3AHR90.0A0A0D3AHR9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D7J30.0A0A3P6D7J3_BRAOL; Uncharacterized protein
STRINGBo2g006530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-152C2H2 family protein