PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620809.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 996aa    MW: 110281 Da    PI: 8.359
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40110186278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv++C +dls ak+yhrrhkvCevhska++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  XP_013620809.1 110 CQVDNCIEDLSVAKDYHRRHKVCEVHSKATKAIVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 186
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-32103171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.727107184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-37108189IPR004333Transcription factor, SBP-box
PfamPF031101.8E-28110183IPR004333Transcription factor, SBP-box
CDDcd002041.11E-6753887No hitNo description
Gene3DG3DSA:1.25.40.204.5E-6796901IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.87E-7797890IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MEEIGPQVAA PVSLHHPMAR KRHPHWLVSS QPQPRNDWNP DMWEWDSQRF EAKPVEAEAN  60
NVNVSHEREG RGLDLNLSGG FNDAPIVTRP NKRVKSGSPG SAGGGNYPKC QVDNCIEDLS  120
VAKDYHRRHK VCEVHSKATK AIVGKQMQRF CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR  180
RRKTQPEEIV APNNTSNNAN MDVMALLTAL ACAQGRNDAK PNGSPAVPQR QQLLQILDKI  240
KALPLPVDLV SKLNNIGVLA RKNLDQPSAM NPQNDMNGVS SPSTMDLLAV LSTTLGSSGP  300
EAIAFLSQGG FGDKDINEKT KLTSSDHAIT TNLEKRTLEL TSFGEGERTS SSHPSPSQDS  360
DLHAQDTRPN LSLQLFTSSP EDESQPTVAS SGKYYSSASS NPVEDRSPSS SPVMQEFFPL  420
QTSPETMRSN NNCRNSSPSP KTSCLPLELF GAANPSFNVS RHHQSGYASS GSDNSPPSLN  480
SDAQDRTGKI IFKLLGKDPS QLPGTLRTEI YSWLSSIPSE MESYIRPGCV VLSVYVAMSA  540
SAWEQLEENL LQRVSSLVQD SEFWSNTRFL VNTGRQLASY KHGRIRLSKS RRTLSSPELI  600
TVSPLAVVAG EETTLVVRGR SLTNDGISFR CAHMGNYSSM EVTGTAYRST KFDELIVNRF  660
QVKCPSPGSL GRCFVEVENG FRSDSFPLII ASATICRELN RLEDEFHPNE LTEHSSDRPR  720
SREEVVCFLN ELGWLFQKKC ASEFSLPRFK FLLVCSVERD YSFLVRTLLD RLVERNLGKD  780
GLMNKESLDM LAEIQLLNRA VKRRNTKMAE TLIQYSVNPT AKKFIFLPNI TGPGDITPLH  840
LAASTSGSDD MIDVLTKDPQ EIGLCCWNTL IDVCGQTPFS YAAMRNNHSY NTLVARKLAD  900
KRNGQISLNI ENGIDQIGLS KRLSSELKRS CNTCASVALK YQKKVSGSRR LFPTPVIHSM  960
LAVATVCVCV CVFMHAFPIV RQGSHFSWGG LDYGSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30100183184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1798803RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620809.10.0PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLA0A0D3AR230.0A0A0D3AR23_BRAOL; Uncharacterized protein
STRINGBo2g091010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein