PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620801.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 450aa    MW: 49690.8 Da    PI: 6.6776
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.8e-13113151241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++++C+Ck s+Clk+YCeCfa+g++C+  C+C +C+N+ e
  XP_013620801.1 113 KQRRCKCKASRCLKLYCECFASGSYCNG-CNCLKCQNTLE 151
                     7899************************.********976 PP
2TCR48.12.3e-15191230140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k+++gCnCk+s ClkkYCeC++a++ Cse+C+C +CkN e
  XP_013620801.1 191 KHSRGCNCKRSGCLKKYCECYQANARCSENCRCRHCKNFE 230
                     5899**********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.6E-14112152IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.125113231IPR005172CRC domain
PfamPF036382.0E-10115149IPR005172CRC domain
SMARTSM011144.1E-15191232IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11194229IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEKSDHDSVS NRNHSPRQSD SSVPAAAAEA KMDPSNESAI KQSHPVPDSQ DRREEDLPSH  60
PHTPPSSSEK QPSATQDATP PQTLPVHRNQ EPLTPRGQQQ TEAESDDDGT PSKQRRCKCK  120
ASRCLKLYCE CFASGSYCNG CNCLKCQNTL ENEAERQEAI KAILERNPGA FKRKIGASPQ  180
EDVSQLVTLG KHSRGCNCKR SGCLKKYCEC YQANARCSEN CRCRHCKNFE GSQDIKQTTN  240
ATVDLAIDLP QSRKIKAASH SVADRGSSAF PHVQDQTVNY VVRNGDTSLF AVPNNRVVSG  300
STAPTYSYRS SQSDTNQLRH AKELCSLLVS KSMEVANKMS DCVLDAGRMN EKLMSPATRA  360
LMCDEEPVTI SEKEASVRVR TSQEKEDTDT SSEVYAEQEN QILSNFRDHL MQLFNRGSIN  420
GTNIQKANTD PSRKEPEDEE QSHGDSSLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-2911723614128Protein lin-54 homolog
5fd3_B5e-2911723614128Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324501e-70AC232450.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620801.10.0PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X2
SwissprotF4JY841e-141TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A0D3AXL40.0A0A0D3AXL4_BRAOL; Uncharacterized protein
STRINGBo2g158480.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-142Tesmin/TSO1-like CXC domain-containing protein