PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620715.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 284aa    MW: 30744.2 Da    PI: 6.186
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-331569155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    k+rlrWt+eLHerFv+ v+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_013620715.1 15 KQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7861272IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-311470IPR009057Homeodomain-like
SuperFamilySSF466894.12E-171469IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-251570IPR006447Myb domain, plants
PfamPF002493.7E-81768IPR001005SANT/Myb domain
PfamPF143791.4E-23101147IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEADNGGNNS SHASKQRLRW THELHERFVD SVAQLGGPDR ATPKGVLRVM GVQGLTIYHV  60
KSHLQKYRLA KYLPDSSLEG KKTDKKESGD VLSGLDGSSG MQITEALKLQ MEVQKRLHEQ  120
LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ALGEPSGPVT GESDPATPAP TSESPLQDKS  180
GKDCGPDKSL SVDESLSSYR EPLTPESGCN AGSQDESAGE ERSSKKPRLV RGGAAGYTPE  240
MVVAHPILES GLNASYHQPD HALAFDHPST SLLGTQDKVS GDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620715.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0847250.0AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620714.10.0PREDICTED: protein PHR1-LIKE 1-like
RefseqXP_013620715.10.0PREDICTED: protein PHR1-LIKE 1-like
RefseqXP_013620716.10.0PREDICTED: protein PHR1-LIKE 1-like
RefseqXP_013620717.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ9SJW00.0PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3N6PWY40.0A0A3N6PWY4_BRACR; Uncharacterized protein
STRINGBra014348.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-164G2-like family protein