PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013620715.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 30744.2 Da PI: 6.186 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.5 | 3e-33 | 15 | 69 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+ v+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_013620715.1 15 KQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.786 | 12 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-31 | 14 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-17 | 14 | 69 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-25 | 15 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.7E-8 | 17 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-23 | 101 | 147 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEADNGGNNS SHASKQRLRW THELHERFVD SVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSLEG KKTDKKESGD VLSGLDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ALGEPSGPVT GESDPATPAP TSESPLQDKS 180 GKDCGPDKSL SVDESLSSYR EPLTPESGCN AGSQDESAGE ERSSKKPRLV RGGAAGYTPE 240 MVVAHPILES GLNASYHQPD HALAFDHPST SLLGTQDKVS GDDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-23 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013620715.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084725 | 0.0 | AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620714.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_013620715.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_013620716.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_013620717.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q9SJW0 | 0.0 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A3N6PWY4 | 0.0 | A0A3N6PWY4_BRACR; Uncharacterized protein | ||||
STRING | Bra014348.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-164 | G2-like family protein |