PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620447.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 952aa    MW: 105286 Da    PI: 7.1126
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-165693299
                    --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    + ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +  + +++l+++++r+
  XP_013620447.1  5 C-QELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIR--DGKAQLLLGIRRA 69
                    4.48999*********************************************5..4678889999997 PP
2Auxin_resp116.32.6e-3894176183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++  rr++Gtv+g+sdldpvrW+ S+Wr+L+
  XP_013620447.1  94 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKSSQWRNLQ 176
                     799******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.801170IPR003340B3 DNA binding domain
SMARTSM010190.008170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-24283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-21297IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-11368No hitNo description
PfamPF023627.0E-14569IPR003340B3 DNA binding domain
PfamPF065072.1E-3394176IPR010525Auxin response factor
PfamPF023091.5E-9823911IPR033389AUX/IAA domain
PROSITE profilePS5174526.956825918IPR000270PB1 domain
SuperFamilySSF542777.85E-9838903No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009638Biological Processphototropism
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009785Biological Processblue light signaling pathway
GO:0010311Biological Processlateral root formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MQPPCQELVA KDIHDNTWTF RHIYRGQPKR HLLTTGWSVF VSNKRLFAGD SVLFIRDGKA  60
QLLLGIRRAN RQQPALSSSV ISSDSMHIGV LAAAAHANAN NSPFTIFYNP RAAPAEFVVP  120
LAKYTKAMYA QVSLGMRFRM IFETEECGVR RYMGTVTGIS DLDPVRWKSS QWRNLQIGWD  180
ESAAGDRPSR VSVWDIEPVL TPFYICPPPF FRPRFAGHPG MPDDETDMES ALKRAMPWLD  240
NGLEMKDSSS SIFPGLSLVQ WMSMQQQNGQ LPSAASAAQS GFFPSMLPPT SGMHNNLGGT  300
DDPSKLLSFQ TPPGGISSAN LQFNKPNPQA SMSQLPQPPT TLSQQQQLRQ LLHSSLNHQQ  360
QQSQSQQQQQ RLQQQHHQPL QQQTQQLQQQ QQQQQQQLQS HSHSHLLSQS KPQPQQLEPH  420
QLQQFQLQQN QLPQNQLYNG QQAAQQQHQA QQASMHHLQP PVVSVSMASS VIVPPSSSLN  480
QNCQQQQQQS TQLQHTHRHL GASTSQSSVI ETSKSSSSLM SIPPQDTQFP RQLEQQQPPG  540
LVNGPNQQHK AQQIFQQSLL EQPHLQFQLL QRLQQQQQQQ QQFLMPGSSS LQSQLLHQQL  600
QQPPPQMLVS RPHDKQNPLV GGGGVKAYSG ITDGGDAPSS STSPSTNNCQ ISSSNFLNRT  660
QSGPPTLMPD AAVDISGNLV QDLYSKSDMR LKHELAGPQK SKASLTDHHH QLEASASGTS  720
FLAPTFGLES DSRNSLLGGG ANVDNGFVPD TLLSRGYDSQ KDLQNMLSNY GGVANDIGTE  780
MSTSAIRTQS FGIPNVPAIS NDVAVNDAGG VLGGGLWPTQ TQRMRTYTKV QKRGSVGRSI  840
DVNRYRGYDE LRHDLARMFG IEGQLEDPQT SDWKLVYVDH ENDILLVGDD PWEEFVNCVQ  900
SIKILSSAEV QQMSLDGNFA GVPVTNQACS GGDSGNAWRG HYDDNSATSF NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-952197192388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794700.0JN979470.1 Brassica rapa subsp. pekinensis auxin response factor 7-2 (ARF7-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620446.10.0PREDICTED: auxin response factor 7 isoform X1
TrEMBLA0A0D3AK850.0A0A0D3AK85_BRAOL; Auxin response factor
TrEMBLA0A3P6D6460.0A0A3P6D646_BRAOL; Auxin response factor
STRINGBo2g023110.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein