PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620446.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 1111aa    MW: 122661 Da    PI: 6.9468
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.65e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +  + +
  XP_013620446.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIR--DGK 218
                     99*****************************98888885.9************************************************5..467 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_013620446.1 219 AQLLLGIRRA 228
                     8889999997 PP
2Auxin_resp1163.2e-38253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++  rr++Gtv+g+sdldpvrW+ S+Wr+L+
  XP_013620446.1 253 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKSSQWRNLQ 335
                     799******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-42117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41121242IPR015300DNA-binding pseudobarrel domain
CDDcd100177.45E-20126227No hitNo description
SMARTSM010192.2E-22127229IPR003340B3 DNA binding domain
PfamPF023622.7E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196127229IPR003340B3 DNA binding domain
PfamPF065072.5E-33253335IPR010525Auxin response factor
PfamPF023091.9E-99821070IPR033389AUX/IAA domain
PROSITE profilePS5174526.9569841077IPR000270PB1 domain
SuperFamilySSF542779.81E-99971062No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009638Biological Processphototropism
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009785Biological Processblue light signaling pathway
GO:0010311Biological Processlateral root formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MKAPSPNGVS PNPVEGDRRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK  60
QTDFIPSYPN LPSKLICMLQ NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN  120
RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR  180
HIYRGQPKRH LLTTGWSVFV SNKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI  240
SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI  300
FETEECGVRR YMGTVTGISD LDPVRWKSSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT  360
PFYICPPPFF RPRFAGHPGM PDDETDMESA LKRAMPWLDN GLEMKDSSSS IFPGLSLVQW  420
MSMQQQNGQL PSAASAAQSG FFPSMLPPTS GMHNNLGGTD DPSKLLSFQT PPGGISSANL  480
QFNKPNPQAS MSQLPQPPTT LSQQQQLRQL LHSSLNHQQQ QSQSQQQQQR LQQQHHQPLQ  540
QQTQQLQQQQ QQQQQQLQSH SHSHLLSQSK PQPQQLEPHQ LQQFQLQQNQ LPQNQLYNGQ  600
QAAQQQHQAQ QASMHHLQPP VVSVSMASSV IVPPSSSLNQ NCQQQQQQST QLQHTHRHLG  660
ASTSQSSVIE TSKSSSSLMS IPPQDTQFPR QLEQQQPPGL VNGPNQQHKA QQIFQQSLLE  720
QPHLQFQLLQ RLQQQQQQQQ QFLMPGSSSL QSQLLHQQLQ QPPPQMLVSR PHDKQNPLVG  780
GGGVKAYSGI TDGGDAPSSS TSPSTNNCQI SSSNFLNRTQ SGPPTLMPDA AVDISGNLVQ  840
DLYSKSDMRL KHELAGPQKS KASLTDHHHQ LEASASGTSF LAPTFGLESD SRNSLLGGGA  900
NVDNGFVPDT LLSRGYDSQK DLQNMLSNYG GVANDIGTEM STSAIRTQSF GIPNVPAISN  960
DVAVNDAGGV LGGGLWPTQT QRMRTYTKVQ KRGSVGRSID VNRYRGYDEL RHDLARMFGI  1020
EGQLEDPQTS DWKLVYVDHE NDILLVGDDP WEEFVNCVQS IKILSSAEVQ QMSLDGNFAG  1080
VPVTNQACSG GDSGNAWRGH YDDNSATSFN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1672135651388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794700.0JN979470.1 Brassica rapa subsp. pekinensis auxin response factor 7-2 (ARF7-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620446.10.0PREDICTED: auxin response factor 7 isoform X1
TrEMBLA0A0D3AK850.0A0A0D3AK85_BRAOL; Auxin response factor
TrEMBLA0A3P6D6460.0A0A3P6D646_BRAOL; Auxin response factor
STRINGBo2g023110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein