PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620409.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 389aa    MW: 44338.9 Da    PI: 6.156
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.81.9e-25288371186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev+aLi+ r+e+ee+ +    k++ W+e+s++m+ rg+ers+k+Ckekwen+nk+yk++ e++kk+ +e+++t +yf+ le
  XP_013620409.1 288 RWPQEEVQALIASRSEVEEKTGVV-HKGAIWDEISARMKGRGYERSAKKCKEKWENMNKYYKRVMESSKKQ-PEHTKTRSYFELLE 371
                     8********************998.89******************************************95.9*********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-4285346IPR001005SANT/Myb domain
SuperFamilySSF466898.65E-5287355IPR009057Homeodomain-like
PfamPF138372.5E-19287372No hitNo description
CDDcd122033.71E-23287350No hitNo description
PROSITE profilePS500907.468288344IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-5288344IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MELLAGNCRK RLADDDFAED VDPFGGSDWM YGGRSLRSQE NDDALATLAD LAPPPQKLKP  60
IRCVVNKASL EDRHPLDILA GSLDRLPEMG FLEDGCFDAP LGSKIADVEE SGQSTRGVGK  120
GLGFETEVQG QIHDTSRDGV SLSPSFDSDS EGDSSQGVGK AVTGKRKRQS REKLEHFMEK  180
LVGKMMKRQE KLHNQLINVM EKMEWERVRS EEAWRQQEME RMKQNEEARR EEMSRSSTLI  240
SFIKSVIGEE IKIPNAFVHA QPLQTIPRQC EWDQTQGDVK FVFPGGRRWP QEEVQALIAS  300
RSEVEEKTGV VHKGAIWDEI SARMKGRGYE RSAKKCKEKW ENMNKYYKRV MESSKKQPEH  360
TKTRSYFELL ESFYKTNSVT AEHSGEKEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620409.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLA0A0D3AV050.0A0A0D3AV05_BRAOL; Uncharacterized protein
STRINGBo2g133550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-147Trihelix family protein