PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620176.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 181aa    MW: 20005.4 Da    PI: 9.1185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-183988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_013620176.1 39 NFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88
                    69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.18E-333898No hitNo description
PfamPF008475.2E-123888IPR001471AP2/ERF domain
PROSITE profilePS5103222.5633996IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-213997IPR016177DNA-binding domain
SMARTSM003803.2E-3839102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-323997IPR001471AP2/ERF domain
PRINTSPR003675.0E-104051IPR001471AP2/ERF domain
PRINTSPR003675.0E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MQDSSLPRSE RNLRSLVLER TGKNSKFKNG QKSVSKHPNF RGVRMRQWGK WVSEIREPRK  60
KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELAC HLPRPASADP KDIQAAAAAA  120
AVEWKAPESP SSTGTSSMTS SSVADDAFSD LPDLLLDAND HKVDGFWDSF PYEEPFFMGN  180
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-172896372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620176.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620176.11e-132PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9SUK86e-93ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A0D3A7H81e-131A0A0D3A7H8_BRAOL; Uncharacterized protein
STRINGBo1g053270.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.17e-93ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]