PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013620144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 367aa MW: 40587.8 Da PI: 5.8062 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.5 | 2.4e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C++++ +lC +C ++H+ H++ XP_013620144.1 4 MCDFCGEQRSMVYCRSDDACLCLSCDRSIHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 23.7 | 9.9e-08 | 46 | 93 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41 +C++++ ++++ C + ++ lC++C ++H++ H++++ XP_013620144.1 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnsnslsshHKRQS 93 68*****************************88889999999888766 PP | |||||||
3 | CCT | 60.8 | 4.5e-21 | 310 | 353 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrF k+ XP_013620144.1 310 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFIKAG 353 99**************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.783 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.17E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.115 | 43 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00278 | 47 | 73 | No hit | No description |
SMART | SM00336 | 0.42 | 48 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.0E-16 | 310 | 352 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.08 | 310 | 352 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD DACLCLSCDR SIHSANALSK RHSRTLVCER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNN NSNSLSSHHK RQSISCYSGC PSSSELASLW SFCSDLAGQS 120 VCEQEMGMMN IDDDGQTNQN CNEDKKDVIV GSSSRLETSY AAHANSSFAK DIGVCEDDFY 180 DNLGMDEVDL ALENYEELFG TAFNSSGHLF GQCGIDSLFQ KHQAAPEVGN SVQPAESNDS 240 FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSVQLLGDP PWYPQTSQQD 300 NNACSHSVTR NNAVMRYKEK KKARKFDKTV RYASRKARAD VRRRVKGRFI KAGEAYDYDP 360 LTPTRSY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013620144.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619988.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_013620050.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_013620144.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_013620212.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0D3AF43 | 0.0 | A0A0D3AF43_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G0Z1 | 0.0 | A0A3P6G0Z1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g147240.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |