PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013620130.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 585aa MW: 62770.5 Da PI: 7.182

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013620130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28	3.7e-09	370	402	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + XP_013620130.1 370 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 402 89*****************************87 PP
2	BELL	104.2	8.7e-34	225	293	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+ kkk+ L+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lk +S+hF+cLk+ai++q+ XP_013620130.1 225 ENGKKKSMLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKVLSKHFKCLKNAITDQL 293 889***************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.4E-61	162	291	IPR006563	POX domain
Pfam	PF07526	1.6E-33	167	290	IPR006563	POX domain
SMART	SM00389	4.0E-9	346	410	IPR001356	Homeobox domain
CDD	cd00086	2.08E-11	346	407	No hit	No description
SuperFamily	SSF46689	8.55E-17	348	413	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-27	350	410	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-18	363	402	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	11.645	365	406	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MSDAYEPYHV LQHSRRDKLR MPSLDSHFHF HHPPPPPSSS GGGGVFPIAD SDFLAAGGFH 60 SNNNNNPSYS NFMGFLGGPS SSSSTAVAVA GDHSFNAGLS SGDVLVFKPE PLSLSLSSHP 120 RPTYDLVVPG VVNSGFCRSA AEAAAAAVTV ASRSSGPLGP FTGYASILKG SKFLKPAQML 180 LDDFCSVSRA VYTEQIVDDE DDDSSLLFDP TIDNLCGVSD AGVGENGKKK SMLISMLDEV 240 YKRYKQYYEQ LQAVMGSFEC VAGLGHAAPY ASLTLKVLSK HFKCLKNAIT DQLQFSTNNK 300 IQQQRGHVMN SENNTDFLGF GGSDSSRGLC SAGQRHGFPD HHAPVWRPHR GLPERAVTVL 360 RAWLFDHFLH PYPTDTDKLM LAKQTGLSRN QVSNWFINAR VRVWKPMVEE IHMLETRQSQ 420 KSSSSSWRDT PTVFPDNNNN PSSSTAQQRA NNNSSPARRV RNDDVHATTN TNNNHFMNAG 480 NSGNIGGGGA VSFSYGIASS NVTGMNTSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD 540 GGSSGGGAGG QSYGGGGGGY EGQDRPFGRD FIGGSNHQFL HDFVG

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MSDAYEPYHV LQHSRRDKLR MPSLDSHFHF HHPPPPPSSS GGGGVFPIAD SDFLAAGGFH  60
SNNNNNPSYS NFMGFLGGPS SSSSTAVAVA GDHSFNAGLS SGDVLVFKPE PLSLSLSSHP  120
RPTYDLVVPG VVNSGFCRSA AEAAAAAVTV ASRSSGPLGP FTGYASILKG SKFLKPAQML  180
LDDFCSVSRA VYTEQIVDDE DDDSSLLFDP TIDNLCGVSD AGVGENGKKK SMLISMLDEV  240
YKRYKQYYEQ LQAVMGSFEC VAGLGHAAPY ASLTLKVLSK HFKCLKNAIT DQLQFSTNNK  300
IQQQRGHVMN SENNTDFLGF GGSDSSRGLC SAGQRHGFPD HHAPVWRPHR GLPERAVTVL  360
RAWLFDHFLH PYPTDTDKLM LAKQTGLSRN QVSNWFINAR VRVWKPMVEE IHMLETRQSQ  420
KSSSSSWRDT PTVFPDNNNN PSSSTAQQRA NNNSSPARRV RNDDVHATTN TNNNHFMNAG  480
NSGNIGGGGA VSFSYGIASS NVTGMNTSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD  540
GGSSGGGAGG QSYGGGGGGY EGQDRPFGRD FIGGSNHQFL HDFVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5bng_A	7e-17	352	410	1	59	Homeobox protein Meis2
5bng_B	7e-17	352	410	1	59	Homeobox protein Meis2
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269\|PubMed:12874117}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013620130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620130.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	0.0	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	A0A0D3AHF8	0.0	A0A0D3AHF8_BRAOL; Uncharacterized protein
STRING	Bo2g002450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5688	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	0.0	TALE family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]