PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013620090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 29023.3 Da PI: 8.917 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 3 | 48 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W+ e+d + +a + + + W++Ia+ ++ g++ +q+k+++ XP_013620090.1 3 AWSREDDIAFERALASYTDEsedKWEKIAADVP-GKSVEQIKEHYEV 48 7*****************99*************.**********965 PP | |||||||
2 | Myb_DNA-binding | 42.2 | 1.9e-13 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky XP_013620090.1 107 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 151 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.383 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 7.6E-7 | 1 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 2 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-8 | 3 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.46E-9 | 3 | 50 | No hit | No description |
SuperFamily | SSF46689 | 1.72E-10 | 4 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.581 | 99 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-16 | 102 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-17 | 104 | 154 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-10 | 104 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-11 | 107 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.51E-10 | 107 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 107 | 150 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MTAWSREDDI AFERALASYT DESEDKWEKI AADVPGKSVE QIKEHYEVLV EDVSRIESGC 60 VPLPAYNSPR GGSGGGGDDG GSTKKGGNSH VGESKAKSDQ ERRKGIAWTE DEHRLFLLGL 120 DKYGKGDWRS ISRNFVVTRT PTQVASHAQK YFIRLNSMNK ERRRTSIHDI TSVGDAVVST 180 PQGPITGQNN NNNGSAGAVA GGGNKSAKQG VSQQPPPGPP VYGTPSIGPQ PVVGTPVSLP 240 APPHMAFAAP VPGSVVPQMP YTTMPRTPTA HR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-16 | 4 | 68 | 11 | 75 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013620090.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620090.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_013675762.1 | 0.0 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 1e-156 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0D3AI80 | 0.0 | A0A0D3AI80_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g009130.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3556 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-127 | MYB family protein |
Publications ? help Back to Top | |||
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