PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620073.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 271aa    MW: 30018.6 Da    PI: 7.9662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.6e-067092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C+k+Fs++  L  H++ H
  XP_013620073.1 70 YTCHFCNKRFSTSQALGGHQNAH 92
                    9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-76797No hitNo description
Gene3DG3DSA:3.30.160.605.8E-66896IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-57094IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.0097097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSSSTSSTPQ PVVIEAMEES KEIAAESNNL RLGSPQEAMS RSENPSFRSD PVRTGSEIMK  60
FYPSKSNKIY TCHFCNKRFS TSQALGGHQN AHKQERDWDK KRKEMEANFP GLSFLSPYLD  120
KPHLLLGGYS QDALSNDNHL GITLEPVLKR TRTGLYPSFS GGLTNVAIVP RMTPTRFFTG  180
TTCTNGSSVG LAPRPSYNNN RPMIPRNIPP FPPPPRTTNL SSVCYSQKNV LSEENLISKV  240
GNDKIVEIDD DDDQTEEGKS KSWGIDLSLS L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895790.0AC189579.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011I15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620073.10.0PREDICTED: zinc finger protein JAGGED-like
TrEMBLA0A0D3AXB40.0A0A0D3AXB4_BRAOL; Uncharacterized protein
STRINGBo2g155500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.14e-90C2H2 family protein