PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013620055.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 180aa MW: 20628.5 Da PI: 7.5775

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013620055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.7	1.7e-26	91	141	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++ +++k+F+ pik+AAkeL+v+lTvLK++CR++GI+RWPhRk+ksl XP_013620055.1 91 KDKLEMVEIKKFFDRPIKNAAKELNVGLTVLKKRCRELGIHRWPHRKLKSL 141 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.62	79	162	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	94	141	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MLKKLLPLDS LLYTEDPKPS AGFNSQFDPT SFEEFSENIE GNNTISSDML TEELFFSNYS 60 SSHVAAQNND SVSSNERCQM RTLKKRNTVT KDKLEMVEIK KFFDRPIKNA AKELNVGLTV 120 LKKRCRELGI HRWPHRKLKS LNSLIGNLKG VGMEEEVKNL EEHRILIKQE PDAELTDARS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013620055.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620055.1	1e-131	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	3e-67	RKD4_ARATH; Protein RKD4
TrEMBL	A0A0D3AML1	1e-126	A0A0D3AML1_BRAOL; Uncharacterized protein
STRING	Bo2g046220.1	1e-127	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-64	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]