PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619988.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 367aa    MW: 40587.8 Da    PI: 5.8062
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-07444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C++++ +lC +C  ++H+       H++
  XP_013619988.1  4 MCDFCGEQRSMVYCRSDDACLCLSCDRSIHSAnalskrHSR 44
                    6*****************************65677777765 PP
2zf-B_box23.79.9e-084693441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41
                     +C++++ ++++  C + ++ lC++C  ++H++          H++++
  XP_013619988.1 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnsnslsshHKRQS 93
                    68*****************************88889999999888766 PP
3CCT60.84.5e-21310353144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrF k+ 
  XP_013619988.1 310 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFIKAG 353
                     99**************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.783147IPR000315B-box-type zinc finger
SMARTSM003362.2E-9447IPR000315B-box-type zinc finger
CDDcd000211.17E-7447No hitNo description
PROSITE profilePS501199.1154394IPR000315B-box-type zinc finger
CDDcd000210.002784773No hitNo description
SMARTSM003360.424894IPR000315B-box-type zinc finger
PfamPF062034.0E-16310352IPR010402CCT domain
PROSITE profilePS5101715.08310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD DACLCLSCDR SIHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NSNSLSSHHK RQSISCYSGC PSSSELASLW SFCSDLAGQS  120
VCEQEMGMMN IDDDGQTNQN CNEDKKDVIV GSSSRLETSY AAHANSSFAK DIGVCEDDFY  180
DNLGMDEVDL ALENYEELFG TAFNSSGHLF GQCGIDSLFQ KHQAAPEVGN SVQPAESNDS  240
FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSVQLLGDP PWYPQTSQQD  300
NNACSHSVTR NNAVMRYKEK KKARKFDKTV RYASRKARAD VRRRVKGRFI KAGEAYDYDP  360
LTPTRSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619988.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_013620050.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_013620144.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_013620212.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D3AF430.0A0A0D3AF43_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G0Z10.0A0A3P6G0Z1_BRAOL; Uncharacterized protein
STRINGBo1g147240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9