PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 31382.8 Da PI: 9.0166 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 5.9e-19 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+ G g W+++a++ g++R++k+c++rw +yl XP_013619948.1 31 KGPWTPEEDKLLTEYVTSKGEGKWSSVAKCAGLNRSGKSCRLRWVNYL 78 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.9e-16 | 84 | 128 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ XP_013619948.1 84 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 128 7888******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.154 | 26 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-31 | 28 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-17 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-24 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.36E-11 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 23.846 | 79 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-14 | 84 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 86 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-9 | 88 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MLDWGVDQVH QPNHDHDPYQ KQQKQLQGCR KGPWTPEEDK LLTEYVTSKG EGKWSSVAKC 60 AGLNRSGKSC RLRWVNYLRP GLKRGQITPQ EEGIILELHS LWGNKWSTIA RYLPGRTDNE 120 IKNYWRTHYK KKDKSFSKQD KYKRSRKQLG MQPQPQNQRS QMVSQNHMNH DNEQNIASSF 180 SYPTSVIHDQ FHMPQSVTAT SSDHSMIDEG NLWGSLWSLN DEDRPHRFGG GWEQRTAADI 240 SEKFNGDRIE APPCGSGEYN YNGFYTGGYI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-25 | 31 | 132 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619948.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371980 | 1e-131 | AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds. | |||
GenBank | AY519593 | 1e-131 | AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619948.1 | 0.0 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | A0A3P6DHJ5 | 0.0 | A0A3P6DHJ5_BRAOL; Uncharacterized protein | ||||
STRING | Bra020744.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-136 | myb domain protein 121 |