PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619892.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 960aa MW: 107099 Da PI: 7.0622

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.6e-08	181	232	22	73
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 +rgk ++ + +ev++++ ++g++r +k kw+n+ ++++k++e+ek+ XP_013619892.1 181 GRGKTRAEKDREVAEYLNRKGVNRDSKVAGTKWDNMLGEFRKVNEWEKGADR 232 2445999999**************************************8633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-7	145	232	No hit	No description
CDD	cd00180	1.43E-9	808	949	No hit	No description
Gene3D	G3DSA:1.10.510.10	4.7E-5	808	912	No hit	No description
SuperFamily	SSF56112	1.38E-13	808	949	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MGETTKGDAT KPSPNQISPP KDSSLDHQTL NPSLLHHQHQ SFLSSPIFIP TVSSPGAPVI 60 PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPSPST AVIAASSTET AGSSPLVQEA 120 TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWK VQYQNQRTGS GSGSGSGSGE 180 GRGKTRAEKD REVAEYLNRK GVNRDSKVAG TKWDNMLGEF RKVNEWEKGA DRERYGKSYF 240 RLSPYERKQH QLPASFDEEV YNELALFIGP RVRAPTISRS VSGGATADVT LTPPSAETLP 300 PPLHPPVMTS RDDDINNNPI TSIGRGKRLA LSTVGDDHPQ YPYSSNIARG SGLFSNRSLY 360 YNPSCERIPS SSSSSSLKDL RRVGKIRLTW EESVNLWAEE GEVDYGRIRV CGSSFLNADE 420 LTYLDDSMVA STMESFEDGP LKGFSLDKFI SGQHLKVFGR QKSTSSSAPP LSVNMAFDRA 480 QLPHSEHIHK SISTLEFQDP SEHCLSKLRV PAGNLPSITE LARYLQEPPP ENLRFPLRLD 540 VYNDLPLGKE LFFSTSSTEL LDCRAITYDI LGPIMSPLNM GFVIFNKDSL IPLWEDCVNR 600 MVSKFCEMVV LRKPDSSSCV ENVQDQWPNV MGFVKGFGLW RGEEVDKVRE GAPDPSSLLV 660 EKILWSYNDL PYILGYHAKG LTVTFCSLSR SSHDRVTCTD LYSFDVSSPS DRIKALVPCY 720 RLASLLPLLA DQCTASRLCY NDYERINHGD LLTEMTPHTV TKYYSSKRKW NVTKGIYDFL 780 DQRIPHAEHL DRASEKDLSL SFKPRGIRVK PLNVDQLIES LMCVTRALVA LHDLSFMHRN 840 MGWENVMKSE TTTTSNAEWF VCGFEEAAES PQLNPHRLAA QEEEEERGRH APEMERGLHA 900 VKVDVWGVGY MIKTCGVSNV PKMLRELQGK CLEPNQENRP TAADCFHHLL QVQPAVPSSY

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MGETTKGDAT KPSPNQISPP KDSSLDHQTL NPSLLHHQHQ SFLSSPIFIP TVSSPGAPVI  60
PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPSPST AVIAASSTET AGSSPLVQEA  120
TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWK VQYQNQRTGS GSGSGSGSGE  180
GRGKTRAEKD REVAEYLNRK GVNRDSKVAG TKWDNMLGEF RKVNEWEKGA DRERYGKSYF  240
RLSPYERKQH QLPASFDEEV YNELALFIGP RVRAPTISRS VSGGATADVT LTPPSAETLP  300
PPLHPPVMTS RDDDINNNPI TSIGRGKRLA LSTVGDDHPQ YPYSSNIARG SGLFSNRSLY  360
YNPSCERIPS SSSSSSLKDL RRVGKIRLTW EESVNLWAEE GEVDYGRIRV CGSSFLNADE  420
LTYLDDSMVA STMESFEDGP LKGFSLDKFI SGQHLKVFGR QKSTSSSAPP LSVNMAFDRA  480
QLPHSEHIHK SISTLEFQDP SEHCLSKLRV PAGNLPSITE LARYLQEPPP ENLRFPLRLD  540
VYNDLPLGKE LFFSTSSTEL LDCRAITYDI LGPIMSPLNM GFVIFNKDSL IPLWEDCVNR  600
MVSKFCEMVV LRKPDSSSCV ENVQDQWPNV MGFVKGFGLW RGEEVDKVRE GAPDPSSLLV  660
EKILWSYNDL PYILGYHAKG LTVTFCSLSR SSHDRVTCTD LYSFDVSSPS DRIKALVPCY  720
RLASLLPLLA DQCTASRLCY NDYERINHGD LLTEMTPHTV TKYYSSKRKW NVTKGIYDFL  780
DQRIPHAEHL DRASEKDLSL SFKPRGIRVK PLNVDQLIES LMCVTRALVA LHDLSFMHRN  840
MGWENVMKSE TTTTSNAEWF VCGFEEAAES PQLNPHRLAA QEEEEERGRH APEMERGLHA  900
VKVDVWGVGY MIKTCGVSNV PKMLRELQGK CLEPNQENRP TAADCFHHLL QVQPAVPSSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619892.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619892.1	0.0	PREDICTED: uncharacterized protein LOC106326463
TrEMBL	A0A0D3AMW3	0.0	A0A0D3AMW3_BRAOL; Uncharacterized protein
STRING	Bo2g048230.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-08	Trihelix family protein