PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 608aa MW: 69011.3 Da PI: 6.2951 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.1 | 9.6e-25 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_013619838.1 112 FTKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYKWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGE 202 89****************************9643..445569************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ XP_013619838.1 203 NGELRVGVRRA 213 999******97 PP | |||||||
2 | Auxin_resp | 112.9 | 3e-37 | 238 | 316 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a ha++t+s+F+v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe++ds+err+sGtvvgv+d++p +W++SkWrsL XP_013619838.1 238 ACHATQTRSMFTVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGDDSPERRFSGTVVGVQDCSP-HWKDSKWRSL 316 6899**************6..9*************************************************.********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.01E-39 | 101 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-42 | 105 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.44E-21 | 110 | 212 | No hit | No description |
SMART | SM01019 | 1.9E-24 | 112 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-33 | 238 | 316 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.2E-7 | 476 | 532 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.89E-12 | 492 | 572 | No hit | No description |
PROSITE profile | PS51745 | 24.865 | 496 | 596 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.8E-6 | 540 | 584 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MTIGEEMYEE LWKLSAGPLV DVPQAEERVY YFPQGHMEQL EASTQQDLNT MKPLFDLPPK 60 ILCRVMNVRL QAEKETDEVY AQIMLMPEGT VDEPMSPDPS LPEPQRPKFH SFTKVLTASD 120 TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAEDVHGY KWKFKHIFRG QPRRHLLTTG 180 WSTFVTSKRL VAGDTFVFLR GENGELRVGV RRANRQQSSM PSSVISSHSM HLGVLATACH 240 ATQTRSMFTV YYKPRTSQFI ISLNKYLEAM NNKFSVGMRF KMRFEGDDSP ERRFSGTVVG 300 VQDCSPHWKD SKWRSLVNWD EPASFTRPDK VSPWEVEPFA ASENVPQSVN KRPRHVNEIS 360 ALGVGVPASN FWSSALTQSH EFAQSCITSQ RNPPQNSDWP VTPYSTLNGQ MVFPVEQKKP 420 EIIASCRLFG IDLMSSSLPA HEEKTAPMRP INITKPTLDS NTDPKSEISK LSEEKKQEPA 480 QASPKEVQSK QINSSRSRTK VQMQGVPVGR AVDLTLINGY VELIDDLEKL FDIEGELKSR 540 NQWEIVFTDD EGDMMLVGDD PWPEFCNMVK RIFIWSKEEV KKMTPGNQLR ILLAEVDTTI 600 SKTENYSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 2 | 339 | 14 | 355 | Auxin response factor 1 |
4ldw_A | 1e-164 | 2 | 339 | 14 | 355 | Auxin response factor 1 |
4ldw_B | 1e-164 | 2 | 339 | 14 | 355 | Auxin response factor 1 |
4ldx_A | 1e-164 | 2 | 339 | 14 | 355 | Auxin response factor 1 |
4ldx_B | 1e-164 | 2 | 339 | 14 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979473 | 0.0 | JN979473.1 Brassica rapa subsp. pekinensis auxin response factor 9-1 (ARF9-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619838.1 | 0.0 | PREDICTED: auxin response factor 9 isoform X2 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A0D3A5S7 | 0.0 | A0A0D3A5S7_BRAOL; Auxin response factor | ||||
TrEMBL | A0A3P6FKE7 | 0.0 | A0A3P6FKE7_BRAOL; Auxin response factor | ||||
STRING | Bo1g037360.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |