PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619833.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 609aa    MW: 69110.5 Da    PI: 6.2951
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.6e-25112213199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_013619833.1 112 FTKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYKWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGE 202
                     89****************************9643..445569************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+v+r+
  XP_013619833.1 203 NGELRVGVRRA 213
                     999******97 PP

2Auxin_resp112.93e-37238316182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a ha++t+s+F+v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe++ds+err+sGtvvgv+d++p +W++SkWrsL
  XP_013619833.1 238 ACHATQTRSMFTVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGDDSPERRFSGTVVGVQDCSP-HWKDSKWRSL 316
                     6899**************6..9*************************************************.********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-39101241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-42105227IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-21110212No hitNo description
SMARTSM010191.9E-24112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83112214IPR003340B3 DNA binding domain
PfamPF023621.2E-22112213IPR003340B3 DNA binding domain
PfamPF065072.4E-33238316IPR010525Auxin response factor
PfamPF023093.2E-7477533IPR033389AUX/IAA domain
SuperFamilySSF542775.89E-12493573No hitNo description
PROSITE profilePS5174524.865497597IPR000270PB1 domain
PfamPF023091.8E-6541585IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MTIGEEMYEE LWKLSAGPLV DVPQAEERVY YFPQGHMEQL EASTQQDLNT MKPLFDLPPK  60
ILCRVMNVRL QAEKETDEVY AQIMLMPEGT VDEPMSPDPS LPEPQRPKFH SFTKVLTASD  120
TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAEDVHGY KWKFKHIFRG QPRRHLLTTG  180
WSTFVTSKRL VAGDTFVFLR GENGELRVGV RRANRQQSSM PSSVISSHSM HLGVLATACH  240
ATQTRSMFTV YYKPRTSQFI ISLNKYLEAM NNKFSVGMRF KMRFEGDDSP ERRFSGTVVG  300
VQDCSPHWKD SKWRSLVVNW DEPASFTRPD KVSPWEVEPF AASENVPQSV NKRPRHVNEI  360
SALGVGVPAS NFWSSALTQS HEFAQSCITS QRNPPQNSDW PVTPYSTLNG QMVFPVEQKK  420
PEIIASCRLF GIDLMSSSLP AHEEKTAPMR PINITKPTLD SNTDPKSEIS KLSEEKKQEP  480
AQASPKEVQS KQINSSRSRT KVQMQGVPVG RAVDLTLING YVELIDDLEK LFDIEGELKS  540
RNQWEIVFTD DEGDMMLVGD DPWPEFCNMV KRIFIWSKEE VKKMTPGNQL RILLAEVDTT  600
ISKTENYSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165234014355Auxin response factor 1
4ldw_A1e-165234014355Auxin response factor 1
4ldw_B1e-165234014355Auxin response factor 1
4ldx_A1e-165234014355Auxin response factor 1
4ldx_B1e-165234014355Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619833.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794730.0JN979473.1 Brassica rapa subsp. pekinensis auxin response factor 9-1 (ARF9-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619833.10.0PREDICTED: auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0D3A5S70.0A0A0D3A5S7_BRAOL; Auxin response factor
TrEMBLA0A3P6FKE70.0A0A3P6FKE7_BRAOL; Auxin response factor
STRINGBo1g037360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9