PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619814.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28959.9 Da    PI: 5.7572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619814.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93e-141058249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                    rien++ r++ f +R +g++KKA+EL +LC+ ++++  f   + kl  +
  XP_013619814.1 10 RIENQRARNTAFKRRTQGLIKKAKELTILCGLDACLTFFNlDDAKLVAW 58
                    8***********************************9886233455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.652149IPR002100Transcription factor, MADS-box
CDDcd002668.54E-22283No hitNo description
PRINTSPR004044.8E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-19395IPR002100Transcription factor, MADS-box
PfamPF003199.0E-151058IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAKEKMKLTR IENQRARNTA FKRRTQGLIK KAKELTILCG LDACLTFFNL DDAKLVAWPS  60
KEVAESLMDR FYSLPSYERN MKAETQESFL KTNIKKIQKK LADCRVSVAE LEMEHLMFDL  120
ENGRSLDDFS QSEIESLRSY TNKKIMGLNK DLGYPEHAYT SVNEPFPGVD QTPRVLDVAF  180
ERAHCSSLMG SRCIYLMDKW FFDDPKVQED GNRNHLPKLV HRFDLNMEPS DDEEDMETYK  240
GESGKSGGAS DA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619814.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619814.10.0PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLA0A0D3AHZ10.0A0A0D3AHZ1_BRAOL; Uncharacterized protein
STRINGBo2g007250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.16e-65AGAMOUS-like 96