PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26417.9 Da PI: 9.1985 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+ ql Le+ F+ + +++ + + +L++ lgL+ rq+ vWFqNrRa++k XP_013619786.1 78 KKKRLTSGQLASLEQSFQGEIKLDSDGKLKLSRDLGLQPRQIAVWFQNRRARWK 131 45679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.5 | 2.7e-36 | 78 | 168 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+ e kL+++ K +l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l+ XP_013619786.1 78 KKKRLTSGQLASLEQSFQGEIKLDSDGKLKLSRDLGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDLVSREKQMLHEEVKKLRAVLR 168 9**************************************************************************************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.95E-16 | 64 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.807 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-15 | 75 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.9E-15 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.71E-12 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-18 | 80 | 140 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEWSMTSNVE NVRVAFMPQP WPESSSFNSL HSFNYDPYAA GNSYTHAVTQ TGPVISVPES 60 EKIINAYRYP SNKNEMTKKK RLTSGQLASL EQSFQGEIKL DSDGKLKLSR DLGLQPRQIA 120 VWFQNRRARW KAKQLEQLYD SLRQEYDLVS REKQMLHEEV KKLRAVLRDQ GLIKKQISGG 180 EDTTELPSVV IAQPRMENLH TNQLTGVNQI YGIDQCNNPM VVASSSWPPY P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619786.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 1e-115 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619786.1 | 1e-173 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-137 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A0D3AHN8 | 1e-172 | A0A0D3AHN8_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g005230.1 | 1e-173 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-139 | homeobox 51 |
Publications ? help Back to Top | |||
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