PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619752.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 232aa    MW: 24772.7 Da    PI: 5.1272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.41e-1469117255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  XP_013619752.1  69 LFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 117
                     689**875..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-1768125IPR016177DNA-binding domain
CDDcd000183.06E-1568125No hitNo description
PROSITE profilePS5103219.25669125IPR001471AP2/ERF domain
PfamPF008471.4E-869117IPR001471AP2/ERF domain
SMARTSM003803.8E-2669131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2569125IPR001471AP2/ERF domain
PRINTSPR003676.8E-67081IPR001471AP2/ERF domain
PRINTSPR003676.8E-6107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSNGSNSLTT RTTSFRVASL ALPSKSSDQS PQSSPGSSSS PTPTPTPSLS AGGSSARRTA  60
TGLSGRHSLF RGIRLRNGKW VSEIREPRKT TRIWLGTYPV PEMAAAAYDV AALALKGPNA  120
VLNFPGLALT YVAPASNSAA DIRAESLAAA GRAAEMKQPY PGGPERVLEP GQSEKEEEEE  180
AMSSSLEFMD EEAMLNMPNL LTEMAQGMLM SPPRMTDPAP ENHEEDSLWS YR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619752.11e-166PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ904e-91ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3P6DC911e-111A0A3P6DC91_BRAOL; Uncharacterized protein
STRINGBra022573.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-74ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]