PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 201aa MW: 23303.6 Da PI: 9.392 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.4 | 5.5e-12 | 84 | 144 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + + +rk +NRe+ArrsR +K+++++ L+ +L +eN++L ++l +++ +e+ XP_013619717.1 84 DEREKKRKKSNRESARRSRMKKQKYLDDLRSQLNQLNTENRELGNKLRYVMHHCQGANMEN 144 4455678899*************************************99999999777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.3E-10 | 81 | 135 | No hit | No description |
SMART | SM00338 | 4.0E-13 | 82 | 146 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.461 | 84 | 130 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.8E-9 | 84 | 143 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.48E-10 | 86 | 137 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 89 | 104 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.37E-15 | 93 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSSILPGFLS QRIVANHLQT LETRFTPWDD ASDIFSIFNS PVCPVEVNPA VEKTNSCHKS 60 DPCPDMEDRP SNLTGLNVFF PKKDEREKKR KKSNRESARR SRMKKQKYLD DLRSQLNQLN 120 TENRELGNKL RYVMHHCQGA NMENERLRVE NQILHEKLMS LRQALVLRQI QQSSTCATWS 180 CVNSTVVTVH QNPSMLRDHV I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 91 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619717.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619717.1 | 1e-150 | PREDICTED: regulatory protein opaque-2-like | ||||
TrEMBL | A0A0D3AYY8 | 1e-148 | A0A0D3AYY8_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g168170.1 | 1e-149 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 1e-26 | basic leucine-zipper 5 |