PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619702.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 518aa MW: 56929.7 Da PI: 6.6139

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C + F++ L H+r+H XP_013619702.1 9 HICDTCRRQFPTLKALYGHQRVH 31 68*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.1E-6	7	37	No hit	No description
Pfam	PF13912	5.3E-6	8	31	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.3E-5	9	35	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.092	9	36	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MMNNNNIVHI CDTCRRQFPT LKALYGHQRV HTRERELERQ LKRTKPSYPP GQGTNYGFSP 60 GTPLVTHNHY HPTLSNFNRP GISFGPFKSG GGGNRRDYPY PLFNGGIAMA PPANPYRSLT 120 QNTSYGSSSR VPLPSFRYNN SLGSANSIGR FSNNNNNNNN NNSSQGELSL ELSLGPSKSM 180 GDSNSNSSSQ GELSLELSLG PSKSMGGSNN NSSAYPSFNC GVTGGGNMYT NMPVRPRVPG 240 YHFYRNNPID SITRNFPLSH PPPATNMMNR LVRPRASRFH FQGHNPLDTI IRNVSLSQPP 300 PTTNIPDDNN ISGSSLIAKE KDKTVVLDDD DKDNVVIVDH DEDQQEEVEA KSCGRGLIIR 360 NVPLSQPPPT TNMNRLVRPR ASRFHFHGHN PLDSIIQNVS LSQPPSTTNL PDDNNVSGTS 420 LIVKEKDNVV IVDHDEGQQE EVEAKSCGRD SIISNVPLSQ PPPTTNLPDD NNVSASSLIT 480 KEKDKTVVLD DDEKDNVGIL DHDEDQQEEV EAKSCGRD

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MMNNNNIVHI CDTCRRQFPT LKALYGHQRV HTRERELERQ LKRTKPSYPP GQGTNYGFSP  60
GTPLVTHNHY HPTLSNFNRP GISFGPFKSG GGGNRRDYPY PLFNGGIAMA PPANPYRSLT  120
QNTSYGSSSR VPLPSFRYNN SLGSANSIGR FSNNNNNNNN NNSSQGELSL ELSLGPSKSM  180
GDSNSNSSSQ GELSLELSLG PSKSMGGSNN NSSAYPSFNC GVTGGGNMYT NMPVRPRVPG  240
YHFYRNNPID SITRNFPLSH PPPATNMMNR LVRPRASRFH FQGHNPLDTI IRNVSLSQPP  300
PTTNIPDDNN ISGSSLIAKE KDKTVVLDDD DKDNVVIVDH DEDQQEEVEA KSCGRGLIIR  360
NVPLSQPPPT TNMNRLVRPR ASRFHFHGHN PLDSIIQNVS LSQPPSTTNL PDDNNVSGTS  420
LIVKEKDNVV IVDHDEGQQE EVEAKSCGRD SIISNVPLSQ PPPTTNLPDD NNVSASSLIT  480
KEKDKTVVLD DDEKDNVGIL DHDEDQQEEV EAKSCGRD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619702.1	0.0	PREDICTED: rho GTPase-activating protein gacO-like
TrEMBL	A0A3P6D660	0.0	A0A3P6D660_BRAOL; Uncharacterized protein (Fragment)
STRING	Bra022712.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23552	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	7e-16	C2H2 family protein