PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619678.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 690aa    MW: 78206.6 Da    PI: 6.1796
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.1e-172979656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++++q++ Le++F+++++p++++r++  ++l+L+ +qVk+WFqN+R+++k
  XP_013619678.1 29 RHSPQQIQMLEAYFRECPHPNESQRQKFCNELNLEINQVKFWFQNKRTQRK 79
                    689*********************************************998 PP
2START101.51.4e-322164356206
                     HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     a +el ++ l +e++Wv ss   +  + +e++ kf+ s         ++e +++++vv+ +++ l   +ld   +W+  ++    ka+t+ ++ s
  XP_013619678.1 216 AVEELKQLFLTDEALWVMSSidgTYVIDQESYEKFSHSIKhfrnlsARVESSKDVTVVPIEATSLIDMFLDLE-KWKMLFPtivnKAKTIHTLGS 309
                     56788899999*********988777788888888776668899999****************7777777766.99999988899********** PP

                     T.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  88 g.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                             ++lq +  +l  lsplvp R+f++vR+++q g+  w+i+dvS    ++ ++ s+s+ +   +pSg+li++++n h++v w+ehv+++
  XP_013619678.1 310 ElpikencNVLQMIWEQLHILSPLVPpREFMIVRCCQQIGERLWIIADVSQHIVNSDQSiSPSCYK---RPSGCLIRSLPNAHTEVRWIEHVEVD 401
                     ************************************************998777776655677666...************************** PP

                     SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                          h ++r lv+ g   ga++w  tl+r ce+
  XP_013619678.1 402 HTADtHRMYRELVSGGSGYGARRWIVTLERMCER 435
                     99988***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-17679IPR009057Homeodomain-like
SuperFamilySSF466892.22E-161081IPR009057Homeodomain-like
PROSITE profilePS5007115.6772181IPR001356Homeobox domain
SMARTSM003891.3E-112185IPR001356Homeobox domain
CDDcd000865.44E-132881No hitNo description
PfamPF000466.4E-152979IPR001356Homeobox domain
PROSITE profilePS5084835.409202438IPR002913START domain
SuperFamilySSF559611.79E-23204436No hitNo description
CDDcd088751.78E-82207434No hitNo description
SMARTSM002341.6E-16211435IPR002913START domain
PfamPF018523.5E-26216435IPR002913START domain
Gene3DG3DSA:3.30.530.207.1E-4218401IPR023393START-like domain
SuperFamilySSF559611.06E-7457650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MDYDGDGSQD NEHYTSVNAM SKEKRICHRH SPQQIQMLEA YFRECPHPNE SQRQKFCNEL  60
NLEINQVKFW FQNKRTQRKA QDERTSNILL RAENEKLQCE NAAMLEALKN VTCPPCGGPP  120
FGREEREPNL HKLRLENPLF KAESDSLAAA KNKYQQTMLD SLTSVQRRQT FEALTSYGMN  180
PYNPFEQPSP SESQTIQPQL LPQMDIPQLS ETAAIAVEEL KQLFLTDEAL WVMSSIDGTY  240
VIDQESYEKF SHSIKHFRNL SARVESSKDV TVVPIEATSL IDMFLDLEKW KMLFPTIVNK  300
AKTIHTLGSE LPIKENCNVL QMIWEQLHIL SPLVPPREFM IVRCCQQIGE RLWIIADVSQ  360
HIVNSDQSIS PSCYKRPSGC LIRSLPNAHT EVRWIEHVEV DHTADTHRMY RELVSGGSGY  420
GARRWIVTLE RMCERMALST ILIMPATDWS ETIPTVEGRK SVMKLGERMV KIFNEMLIMS  480
GKVEFPQQSK CGVRISIRMN MEPGQLPGLV VSAASCLSIP LTPLQVFNSL RSNDTRHQWD  540
VLCHGNAITE TARISTGSSG TNYINLLQPT PPWDIGQNMV QEPHKKMMVL QECYMDALGG  600
MIVYSPLDMA TMSIAASGEV DPLNIPILPS GFTISSDNNR GTVLMLAFQI LISDENSKTR  660
NVSENAADRV SRLISQTVQS IKVMLNCPPE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619678.10.0PREDICTED: homeobox-leucine zipper protein HDG8-like
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A078HX260.0A0A078HX26_BRANA; BnaC02g09070D protein
STRINGBo2g018400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8