PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619627.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 32773.7 Da PI: 5.4532 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1e-13 | 112 | 159 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 + GVr++k +g+W+AeI +p + +r +lg++ t e+Aa a+ a +++l XP_013619627.1 112 KPVGVRQRK-WGKWAAEIIHPI----TkTRTWLGTYETLEQAADAYAAKKLEL 159 678*****9.**********72....36*******************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.4E-11 | 112 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.016 | 112 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 112 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 113 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-13 | 114 | 160 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.61E-17 | 114 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-18 | 115 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSEPKKRSSF QAKKPSKNHK RKTFQLNRLP GLLSEDLKTM RKLRFVVSDP YATDYSSSEE 60 DETCQTRKRY VCEIDRPFSQ ATAQSESESS SCHNGGSKAK ITHVVGRSSV RKPVGVRQRK 120 WGKWAAEIIH PITKTRTWLG TYETLEQAAD AYAAKKLELD ALSAATSSVL SENALSDDSA 180 SGSNVEAVSS IDLDKKLIDF NLADLPIPDM GCFIDESLIS NACKLDFHLP EESDQFLNDM 240 KFIGLERDGP SNLPDYDFSD VEFDLGLVGN IDNRFNFFDH LATTTTTPLN IACL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619627.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619627.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
Swissprot | Q9LUA2 | 1e-111 | EF119_ARATH; Ethylene-responsive transcription factor ERF119 | ||||
TrEMBL | A0A0D3AVY1 | 0.0 | A0A0D3AVY1_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g138790.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2537 | 26 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25890.2 | 1e-106 | ERF family protein |