 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013619609.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C2H2 |
| Protein Properties |
Length: 150aa MW: 16862.6 Da PI: 7.0409 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013619609.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.6 | 9.4e-05 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
XP_013619609.1 50 FSCNYCQRKFYSSQALGGHQNAH 72
89******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 150 aa
Download sequence Send
to blast |
MDFQPNTSLR LSLPSYKNHQ LNLELVLEPS STSSSSSTNS SSCLEQPRVF SCNYCQRKFY 60
SSQALGGHQN AHKLERTLAK KSRELFRSST TVDSDQHYPL SGRFEIYGRG YEGFVESGGR 120
MDFSGRGVPV SGLDQDQDQE MSHLDLSLRL
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB011482 | 1e-139 | AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2. |
| GenBank | ATHZFPB | 1e-139 | L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds. |
| GenBank | CP002688 | 1e-139 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
