PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 273aa MW: 30961.6 Da PI: 5.7307 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57 | 2.7e-18 | 177 | 210 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ + XP_013619607.1 177 CSHCGTNTTPQWRTGPVGPKTLCNACGVRFKSGR 210 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.6E-79 | 7 | 267 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.3E-14 | 171 | 221 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-14 | 174 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.5E-14 | 175 | 208 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.123 | 175 | 207 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.37E-15 | 176 | 233 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 177 | 202 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.1E-16 | 177 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MELWTEARAL KASLRGEAIK HQVIVSEELS RTSSAEDFSV ECFLDFSEEV QEEEELVYIS 60 SSQEEQEQDC CNTSSQPCIF DQLPSLPDGD VEELEWVSRV VDDCSSQEVS LLFTQTHKTR 120 PSFSSRVPVK PRTKRPRNSL AGDRVWPLVS TNQHAAGEQQ WRKKKKQEPV IVFQRRCSHC 180 GTNTTPQWRT GPVGPKTLCN ACGVRFKSGR LCPEYRPADS PTFSNEIHSN LHRKVLELRK 240 SKELVEEETG EAITKSDQVK FGSQSGREDL GKM |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619607.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189529 | 0.0 | AC189529.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619600.1 | 0.0 | PREDICTED: GATA transcription factor 3-like | ||||
Refseq | XP_013619607.1 | 0.0 | PREDICTED: GATA transcription factor 3-like | ||||
Refseq | XP_013619613.1 | 0.0 | PREDICTED: GATA transcription factor 3-like | ||||
Swissprot | Q8L4M6 | 1e-139 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | A0A0D3A1Y1 | 0.0 | A0A0D3A1Y1_BRAOL; GATA transcription factor | ||||
STRING | Bo1g007070.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 1e-130 | GATA transcription factor 3 |
Publications ? help Back to Top | |||
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