PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619496.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 346aa MW: 39407.7 Da PI: 5.0567

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.4	1.6e-35	84	219	2	125
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasnsssg.. 88 a+kkdrhski T++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ + i el++ + +++ ++ ++++++ ++ + XP_013619496.1 84 AVKKDRHSKIDTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEkklN---NKDEdfrNNRGDVEEDEDDG-Dks 174 89**************************************************************5552...32222222222222222111.134 PP TCP 89 .......kaaksaa.kskksqksaasalnlakesrakarararer 125 +++++ + kk++ks+ s l+++ r k+++ re XP_013619496.1 175 fvygsspDSCEEVVyEVKKTEKSNISSKGLMDKARGKSKQITREM 219 566666666666665666666666666666666666666666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-34	85	217	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.11	86	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASLGQMVSA VPESLIDYMS 60 FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIDTAQGLR DRRVRLSIGV ARQFFDLQDM 120 LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDEDFRNN RGDVEEDEDD GDKSFVYGSS 180 PDSCEEVVYE VKKTEKSNIS SKGLMDKARG KSKQITREMT YDHPEAVSEI TQTEIMDPFK 240 MSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDRSYNQHYG TCMSKNQGSS 300 SNYNTILPQN LDYGYDQNPF MDQPFCAVTN RNFPRGKVWV QDSSLA

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASLGQMVSA VPESLIDYMS  60
FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIDTAQGLR DRRVRLSIGV ARQFFDLQDM  120
LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDEDFRNN RGDVEEDEDD GDKSFVYGSS  180
PDSCEEVVYE VKKTEKSNIS SKGLMDKARG KSKQITREMT YDHPEAVSEI TQTEIMDPFK  240
MSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDRSYNQHYG TCMSKNQGSS  300
SNYNTILPQN LDYGYDQNPF MDQPFCAVTN RNFPRGKVWV QDSSLA

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269\|PubMed:11470410}.
Uniprot	TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269\|PubMed:11470410}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619496.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189200	0.0	AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619496.1	0.0	PREDICTED: transcription factor TCP1-like
Swissprot	Q9FYG7	1e-159	TCP1_ARATH; Transcription factor TCP1
TrEMBL	A0A0D3ANK9	0.0	A0A0D3ANK9_BRAOL; Uncharacterized protein
STRING	Bo2g055640.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.1	1e-149	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]