PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 266aa    MW: 30034.5 Da    PI: 9.0103
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.5e-32113166255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_013619450.1 113 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 166
                     9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.68E-15110166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28111166IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-24113166IPR006447Myb domain, plants
PfamPF002493.9E-7114165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIMFESRSSV RGSNSVPDLS LQISLPNSHA EKPLHGSERS FTTSSDSGSS LSELSHENSF  60
LKKHLLSLGF DHHHPYHHHQ RHSSNMFQPQ IYGRDFKRTS SSVVSLKRSI RAPRMRWTST  120
LHAHFVHAVQ LLGGHERATP KSVLELMNVK DLTLAHVKSH LQMYRTVKCT DKGSSGERKV  180
EKEAEQKTED NNNNNEDADA DPISPNSPSV QKTQRSPWSS TKGVSMSISQ ADPHMEIYRI  240
TKDDVEKDHL SLEFTLGRPS WGIDHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269|PubMed:16623911}.
UniprotTISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269|PubMed:15286295}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619450.10.0PREDICTED: probable transcription factor KAN4
SwissprotQ9FJV51e-127KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A078GEU40.0A0A078GEU4_BRANA; BnaC02g29570D protein
TrEMBLA0A0D3ATF50.0A0A0D3ATF5_BRAOL; Uncharacterized protein
STRINGBo2g115180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-111G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]