PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 280aa MW: 30957.2 Da PI: 6.5715 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.1 | 3.9e-15 | 28 | 88 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ XP_013619447.1 28 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLeqfgAVGDTNVFYWFQNRRSRSRR 88 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.4 | 1.8e-34 | 27 | 90 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q XP_013619447.1 27 SRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEQFGAVGDTNVFYWFQNRRSRSRRRQ 90 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 6 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.19E-14 | 21 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.353 | 24 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-6 | 26 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.8E-13 | 28 | 88 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDQEGSSQSP TGQGRSPSAP SNSTAPSRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI 60 RKMLEQFGAV GDTNVFYWFQ NRRSRSRRRQ RQLQTATAAA VTSRGAEDQQ HMTTMSMHHP 120 YRNNEINLGF GSCSNSSANF FFNDPSSQVS SFLLGHSSSS SNGGCVSNNG MENLFTMYGH 180 ESDHPHLHQH SSNDATISNP SDQNSSFHYQ QGLMTVFING VPTEVTEGAI DMKAMFGEDL 240 ALMHSSGLPL PIDEFGFLMH SLQHGQSYFL VTQFNSLLSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619447.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189450 | 0.0 | AC189450.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB071M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619447.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 12-like isoform X1 | ||||
Swissprot | Q8GY25 | 1e-118 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A0D3AP66 | 0.0 | A0A0D3AP66_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g062660.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-95 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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