PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 20877.9 Da PI: 9.8466 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F+++ L H++ H XP_013619406.1 54 FNCHYCSRKFPTSQALGGHQNAH 76 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-4 | 50 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.53E-6 | 50 | 81 | No hit | No description |
Pfam | PF13912 | 7.0E-7 | 53 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.323 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKTHDFMNVE SFSPKVRPIR LFGFEFGTSH EESESSESIN EVNNTTNNNK DKRFNCHYCS 60 RKFPTSQALG GHQNAHKRER QQTKRFHLHS NAAAFFHRNQ YHFAASRFFE GHFSLEAARI 120 NDARLGLLRR YNSSKSCDDH DRTSYQSRPT YGGGGGKSRH DLFYESKTNV TDHVSLDLRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence meristems, floral meristems and stem epidermis. {ECO:0000269|PubMed:17507408}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to ZFP8. {ECO:0000269|PubMed:17507408}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619406.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:17507408}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619406.1 | 1e-132 | PREDICTED: zinc finger protein GIS2 | ||||
Refseq | XP_013674694.1 | 1e-132 | zinc finger protein GIS2-like | ||||
Swissprot | Q9FG05 | 4e-86 | GIS2_ARATH; Zinc finger protein GIS2 | ||||
TrEMBL | A0A0D3AHZ8 | 1e-131 | A0A0D3AHZ8_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g007320.1 | 1e-131 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14659 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 2e-77 | C2H2 family protein |
Publications ? help Back to Top | |||
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