PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013619399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 42385.1 Da PI: 7.2099 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4.1e-32 | 195 | 249 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_013619399.1 195 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 249 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.48E-17 | 194 | 249 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 194 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-23 | 195 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-8 | 199 | 248 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.2E-20 | 279 | 326 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MDNINFETSN ASQGSRLHLH SQSQPPQLFN LQDVNMNHYN QSSPWTSETF SGYTPYDCTA 60 NQSLSVQCSS SKPNHALFHP YHHDQSSDHP SEDQSQSMVP MQLLQDQYLK PLYQKSCAND 120 FAATNASSSS YSLSFDASQD PQELCRRTYS TSNVTQLHFS SSHHHAKQTH PRFSSHSFSA 180 HGGSMAPNCG TVGNKTRIRW TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSEGLTIFHV 240 KSHLQKYRIA KYIPDYQEGK FEKGSCSKEL SQLDTKTGVQ IKEALQLQLD VQRHLHEQLE 300 IQRNLQLRIE EQGKQLKIMI EQQQKTKECL LLKSPNAEAS LSLSASDHSP PPFSIQDAEA 360 LMLKTYGDTQ SQSKIS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-23 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013619399.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619399.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
Refseq | XP_013619400.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
Refseq | XP_013695760.1 | 0.0 | myb family transcription factor PHL5 | ||||
Swissprot | Q0WVU3 | 0.0 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A078FP18 | 0.0 | A0A078FP18_BRANA; BnaC02g01850D protein | ||||
TrEMBL | A0A0D3AI07 | 0.0 | A0A0D3AI07_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g007410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-179 | G2-like family protein |