PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619388.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 27837.9 Da    PI: 8.484
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.3e-291058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rienk++rqvtfskRr+g+ KKA+E+SvLCda+va+i+fs++gkl+eys
  XP_013619388.1 10 RIENKIRRQVTFSKRRTGLVKKAQEISVLCDADVALIVFSPKGKLFEYS 58
                    8***********************************************8 PP
2K-box81.61.7e-27891731599
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++++e +kL + i+ +q ++Rhl+Ge+++ Ls++eLq+Le qL++sl++ Rs+Kn+l++e++ +lqkkekel+e +k+L+kk++
  XP_013619388.1  89 GECSTECSKLLRMIDAMQISLRHLKGEEVDALSIRELQSLEMQLDTSLRRTRSRKNQLMVESLAQLQKKEKELKELKKQLTKKVD 173
                     57899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.6161IPR002100Transcription factor, MADS-box
CDDcd002654.87E-40279No hitNo description
SuperFamilySSF554553.79E-31280IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2287172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.76488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFSP KGKLFEYSAG  60
SSMERILDRY ERCSYAGQDI PTPSLDSQGE CSTECSKLLR MIDAMQISLR HLKGEEVDAL  120
SIRELQSLEM QLDTSLRRTR SRKNQLMVES LAQLQKKEKE LKELKKQLTK KVDQGEDIEP  180
QNISQGLDST PPCETPHLLP GPISPHPPLS IGDTSQMNEV GEEDTGILIR SRNTTLPHWM  240
PRLTGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19170169MEF2C
5f28_B5e-19170169MEF2C
5f28_C5e-19170169MEF2C
5f28_D5e-19170169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412380.0AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619388.11e-180PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ6E6S75e-73AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A398AMD51e-177A0A398AMD5_BRACM; Uncharacterized protein
STRINGBo2g149440.11e-164(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-122AGAMOUS-like 79
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]