PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619299.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 370aa    MW: 41411.2 Da    PI: 6.4543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.8e-27208267259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++  +tYeg+H+h+
  XP_013619299.1 208 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 267
                     8***************************99**********934578899**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-28192269IPR003657WRKY domain
PROSITE profilePS5081124.478202269IPR003657WRKY domain
SuperFamilySSF1182903.66E-24203269IPR003657WRKY domain
SMARTSM007747.0E-33207268IPR003657WRKY domain
PfamPF031065.5E-25208267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MIKEEIDSCV HPLDGGMAES DKEVELDATK AKVDKVRVEN EKLKLLLSTF LTEYNSLQMH  60
VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK KEEQVKKIIA ENNSINNKEG  120
SEKKIWAHGL GFWIQSFEDL DTNQTMMLDD VSREVKNKNV ENKCLSSRKD VKTARNEDQH  180
ELLEEHEQPG LKKTRVCVKA PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP  240
VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF  300
PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG  360
LRSQAPMNTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-182072691474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300520.0KF430052.1 Brassica rapa WRKY transcription factor 36 (WRKY36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619298.10.0PREDICTED: probable WRKY transcription factor 36
RefseqXP_013619299.10.0PREDICTED: probable WRKY transcription factor 36
SwissprotQ9CAR41e-163WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLA0A0D3APG40.0A0A0D3APG4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D6810.0A0A3P6D681_BRAOL; Uncharacterized protein
STRINGBo2g064630.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-130WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]