PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 26714.5 Da PI: 8.1217 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.2 | 3.4e-30 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+ XP_013619182.1 4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGILWSGNWHLCQA 98 6*********************9999777889*************************************************************** PP DUF260 91 kaelallk 98 ++e+++++ XP_013619182.1 99 AVEAVMRG 106 **998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.945 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-25 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGILWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG 120 QAPPFNNNKL FDIRHVSRDE NAVKSRCRSS RSGACKEGRN VRSSLSHESS LSHESAVVKG 180 EGSMVSSEET TEEPSWIGLE LTLGLEPSGA RGSHVVVPIK KRKLEKSGTC DDDADTCKIE 240 LGLVCSE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619182.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473870 | 1e-135 | AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds. | |||
GenBank | AK229650 | 1e-135 | AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22. | |||
GenBank | BT010943 | 1e-135 | BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds. | |||
GenBank | BT011650 | 1e-135 | BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619182.1 | 0.0 | PREDICTED: LOB domain-containing protein 40 | ||||
Refseq | XP_013676373.2 | 0.0 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9ZW96 | 1e-126 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A078HWZ5 | 0.0 | A0A078HWZ5_BRANA; BnaC02g17190D protein | ||||
TrEMBL | A0A0D3ANI6 | 0.0 | A0A0D3ANI6_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g055410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15248 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 1e-127 | LOB domain-containing protein 40 |