PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619181.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 282aa    MW: 31064.7 Da    PI: 6.3662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619181.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.5e-19196230135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  XP_013619181.1 196 CTHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 230
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-981282IPR016679Transcription factor, GATA, plant
SMARTSM004016.6E-15190244IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.859190226IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-13192253No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14194228IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.89E-14195243No hitNo description
PfamPF003201.0E-16196230IPR000679Zinc finger, GATA-type
PROSITE patternPS003440196221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESVELSLKN NNRKEKPDDF SVDDLLDFSN DDVFVEDETK LKSAGVSASL NDEITLNRSN  60
ELSTACEDFG SELAVPTDDL AELEWLSNFV EDSYSAPTKK PVWLTGDGKH PVAPVNEGLC  120
FRAPLPVKIR TKRARTGVNV WSLGSSSLTD SSPSSSSSSN PSSPLWLSGA EFLDEKAVKR  180
QKKVLENGGQ TQTRRCTHCG VQKTPQWRAG PLGAKTLCNA CGVRFKSGRL LPEYRPACSP  240
TFSSELHSNH HRKVIEMRQK KEMSTDVDES GLNRTVQAVQ SF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619181.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896271e-104AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619181.10.0PREDICTED: GATA transcription factor 6-like
SwissprotQ9SD381e-106GATA6_ARATH; GATA transcription factor 6
TrEMBLA0A0D3A8F30.0A0A0D3A8F3_BRAOL; GATA transcription factor
TrEMBLA0A3P6G1J00.0A0A3P6G1J0_BRAOL; GATA transcription factor
STRINGBo1g060480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.15e-88GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]