PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619086.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 562aa MW: 62760.1 Da PI: 5.5194

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	18	37	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk s ++ Lk+H++ XP_013619086.1 18 QCKHCGKQMSGWYRLKHHLS 37 8*****************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04937	1.5E-39	114	258	IPR007021	Domain of unknown function DUF659
SuperFamily	SSF53098	3.19E-24	127	529	IPR012337	Ribonuclease H-like domain
Pfam	PF05699	1.8E-5	459	549	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDIHEHGVRV GKEKRRIQCK HCGKQMSGWY RLKHHLSGVG GDATPCLQVT SSVREAFRTT 60 TTTTTGSKRG RSGDSKANEQ VWCSYPNCFD FSSNGFREMM TTVSGRTIPD PHGSMFGEVL 120 KEVEDHVEKV KDSWAVTGCS ILLDAWVDHK GHDLVTFVAD SPAGSVYLKS FDVSDIKHDS 180 KALISLVDGL VDEVGVHNVV QIIACSASGW VGELGEAYVG NKKGVFWSVS VSHCFELMLM 240 KIGEIDSLGE IVEAVNMITD YVNSNPLALK LVRDQDHSHG LLDMAVLSSE FEFFMPYLTV 300 ESIFRAKDEL AAMFASSSDW NKEEEDIAIS NLVNDSSLWE TVERVLKCSS PLIHGLIWLS 360 SANNNQHVGH VYDNMDVIKE SIAREFDNDK VCYMPLWDVI DDVWNKLHSP LHAAGYFLSP 420 DAFYSTGFHL DAEVAIGLIS SLVHIVKELD VQVKVATQLD VYKVREGCFN ETSQADQVSG 480 LSPAEWWAEK ASQHPELQSF AIKILSQTCE GASRYMLKRN VAEKLLLTRG MSRCEKQHLE 540 ELAFVHYNLH LQSCRAKLSE EQ

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDIHEHGVRV GKEKRRIQCK HCGKQMSGWY RLKHHLSGVG GDATPCLQVT SSVREAFRTT  60
TTTTTGSKRG RSGDSKANEQ VWCSYPNCFD FSSNGFREMM TTVSGRTIPD PHGSMFGEVL  120
KEVEDHVEKV KDSWAVTGCS ILLDAWVDHK GHDLVTFVAD SPAGSVYLKS FDVSDIKHDS  180
KALISLVDGL VDEVGVHNVV QIIACSASGW VGELGEAYVG NKKGVFWSVS VSHCFELMLM  240
KIGEIDSLGE IVEAVNMITD YVNSNPLALK LVRDQDHSHG LLDMAVLSSE FEFFMPYLTV  300
ESIFRAKDEL AAMFASSSDW NKEEEDIAIS NLVNDSSLWE TVERVLKCSS PLIHGLIWLS  360
SANNNQHVGH VYDNMDVIKE SIAREFDNDK VCYMPLWDVI DDVWNKLHSP LHAAGYFLSP  420
DAFYSTGFHL DAEVAIGLIS SLVHIVKELD VQVKVATQLD VYKVREGCFN ETSQADQVSG  480
LSPAEWWAEK ASQHPELQSF AIKILSQTCE GASRYMLKRN VAEKLLLTRG MSRCEKQHLE  540
ELAFVHYNLH LQSCRAKLSE EQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619086.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619079.1	0.0	PREDICTED: uncharacterized protein LOC106325578
Refseq	XP_013619086.1	0.0	PREDICTED: uncharacterized protein LOC106325578
TrEMBL	A0A0D3AE34	0.0	A0A0D3AE34_BRAOL; Uncharacterized protein
STRING	Bo1g138700.1	0.0	(Brassica oleracea)