PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013619079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 562aa MW: 62760.1 Da PI: 5.5194 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 18 | 37 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk s ++ Lk+H++ XP_013619079.1 18 QCKHCGKQMSGWYRLKHHLS 37 8*****************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04937 | 1.5E-39 | 114 | 258 | IPR007021 | Domain of unknown function DUF659 |
SuperFamily | SSF53098 | 3.19E-24 | 127 | 529 | IPR012337 | Ribonuclease H-like domain |
Pfam | PF05699 | 1.8E-5 | 459 | 549 | IPR008906 | HAT, C-terminal dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 562 aa Download sequence Send to blast |
MDIHEHGVRV GKEKRRIQCK HCGKQMSGWY RLKHHLSGVG GDATPCLQVT SSVREAFRTT 60 TTTTTGSKRG RSGDSKANEQ VWCSYPNCFD FSSNGFREMM TTVSGRTIPD PHGSMFGEVL 120 KEVEDHVEKV KDSWAVTGCS ILLDAWVDHK GHDLVTFVAD SPAGSVYLKS FDVSDIKHDS 180 KALISLVDGL VDEVGVHNVV QIIACSASGW VGELGEAYVG NKKGVFWSVS VSHCFELMLM 240 KIGEIDSLGE IVEAVNMITD YVNSNPLALK LVRDQDHSHG LLDMAVLSSE FEFFMPYLTV 300 ESIFRAKDEL AAMFASSSDW NKEEEDIAIS NLVNDSSLWE TVERVLKCSS PLIHGLIWLS 360 SANNNQHVGH VYDNMDVIKE SIAREFDNDK VCYMPLWDVI DDVWNKLHSP LHAAGYFLSP 420 DAFYSTGFHL DAEVAIGLIS SLVHIVKELD VQVKVATQLD VYKVREGCFN ETSQADQVSG 480 LSPAEWWAEK ASQHPELQSF AIKILSQTCE GASRYMLKRN VAEKLLLTRG MSRCEKQHLE 540 ELAFVHYNLH LQSCRAKLSE EQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013619079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619079.1 | 0.0 | PREDICTED: uncharacterized protein LOC106325578 | ||||
Refseq | XP_013619086.1 | 0.0 | PREDICTED: uncharacterized protein LOC106325578 | ||||
TrEMBL | A0A0D3AE34 | 0.0 | A0A0D3AE34_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g138700.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3105 | 3 | 4 |