PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619062.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 219aa    MW: 24333.4 Da    PI: 9.4585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.31.9e-1486130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE++l++ + ++ G+g+Wk I++ + k+Rt  q+ s+ qky
   XP_013619062.1  86 PWSEEEHKLFLLGLEKVGKGNWKGISKNFVKTRTSTQVASHAQKY 130
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-1177131IPR009057Homeodomain-like
PROSITE profilePS5129417.96379135IPR017930Myb domain
SuperFamilySSF466895.76E-1781136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1682133IPR006447Myb domain, plants
SMARTSM007173.1E-1083133IPR001005SANT/Myb domain
PfamPF002495.6E-1286130IPR001005SANT/Myb domain
CDDcd001676.15E-1086131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MADGSNTVAC GISKEIMLFG VRVVLDPMRK SVSLNNLSDY EQTKEILKIG GEDGDGQDMN  60
KTNSCYASAD EAVPVSSNRE RKRGVPWSEE EHKLFLLGLE KVGKGNWKGI SKNFVKTRTS  120
TQVASHAQKY FLRRSNLNRR RRRRSSLFDM TTPTVMPMEE VQENSSQPSS LVPEVNLVPF  180
TSQAWSEPIS LSLSLAISNI NEPSSSYSRH SAFNTIGVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619062.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619062.11e-162PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B05e-50MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0D3AQK21e-161A0A0D3AQK2_BRAOL; Uncharacterized protein
STRINGBo2g082370.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.12e-82MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]