PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 171aa MW: 19756.7 Da PI: 6.6006 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00016 | 66 | 86 | 11 | 30 |
HHHHHHHHHHHHHHCTSCC.C CS HLH 11 rRRdriNsafeeLrellPk.a 30 RR+ri +++ L+el+P+ + XP_013619040.1 66 LRRERIAERIMALQELVPTvN 86 6*****************944 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MKRGCYQGDR HGNCDVGDFH LEEDQSPQRH PLRRHDRGSS SFALLDMIED VVSLYIFLGP 60 ASPQQLRRER IAERIMALQE LVPTVNKVSI FHLLYGSARC WIQILWRLVS CFCKWSQDTH 120 VTSKKTVACD TNEQQSDPIS VPCLFFFYHF LSLELCCQNE TLCLIISVCE T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619040.1 | 1e-126 | PREDICTED: uncharacterized protein LOC106325541 isoform X1 | ||||
TrEMBL | A0A0D3AIY9 | 9e-74 | A0A0D3AIY9_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g011720.1 | 2e-74 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM26518 | 2 | 2 |