PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618945.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 189aa    MW: 21216.4 Da    PI: 6.1456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.2e-1587137255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr++  +g+++AeIrdp   g k  r++lg+f +  +Aa+a++ a+ kl+g
  XP_013618945.1  87 HYRGVRRRA-WGKFAAEIRDP---GkKGSRVWLGTFESGVDAARAYDCAAFKLRG 137
                     7*****777.**********9...6556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-3086146IPR001471AP2/ERF domain
PfamPF008477.1E-1187137IPR001471AP2/ERF domain
SMARTSM003801.3E-3387151IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2287146IPR016177DNA-binding domain
PROSITE profilePS5103223.80287145IPR001471AP2/ERF domain
CDDcd000183.35E-2787145No hitNo description
PRINTSPR003671.4E-128899IPR001471AP2/ERF domain
PRINTSPR003671.4E-12127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MATFEESSDL DAIQKHLFED FMVSDSFMGD FDFDASCVSG LWCIEPAMNQ VPKQEPDSSS  60
AHETDQTVST KKKSKGRFHE EEEEQRHYRG VRRRAWGKFA AEIRDPGKKG SRVWLGTFES  120
GVDAARAYDC AAFKLRGRKA VLNFPLDAGK YEAPANSGRR RKRSDAKEEL QRSQGNSSSS  180
SIDGETTCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2786146464ATERF1
3gcc_A3e-2786146464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.136025e-68leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507111e-107AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618945.11e-139PREDICTED: ethylene-responsive transcription factor ERF106-like isoform X1
RefseqXP_013674608.11e-139ethylene-responsive transcription factor ERF106 isoform X1
SwissprotQ9LY054e-87EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A078FLW01e-137A0A078FLW0_BRANA; BnaC02g01530D protein
TrEMBLA0A0D3AI371e-137A0A0D3AI37_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1K31e-137A0A3P6D1K3_BRAOL; Uncharacterized protein
STRINGBo2g008700.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-88ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]