PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618888.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 532aa    MW: 58660.1 Da    PI: 6.4022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-31158215260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+ +Hnh+k
  XP_013618888.1 158 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHITEIIYTKTHNHPK 215
                     8****************************************.***************85 PP
2WRKY99.62e-31339396259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver+++d + v +tY g+H+he
  XP_013618888.1 339 EDGYRWRKYGQKVVKGNPNPRSYYKCTATGCIVTKHVERASDDLTSVLTTYIGKHTHE 396
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-28155216IPR003657WRKY domain
SuperFamilySSF1182901.96E-25156216IPR003657WRKY domain
SMARTSM007741.5E-33157215IPR003657WRKY domain
PfamPF031064.0E-24158214IPR003657WRKY domain
PROSITE profilePS5081123.261158216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-33323398IPR003657WRKY domain
SuperFamilySSF1182901.07E-27330398IPR003657WRKY domain
PROSITE profilePS5081133.947333398IPR003657WRKY domain
SMARTSM007741.3E-35338397IPR003657WRKY domain
PfamPF031066.3E-24339396IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MTGFSDTFAV MGEWVDCSTN HKKRSKAELD RETSLEEDVK NKDFLQTNFQ ERSSYSGGGL  60
SERIAARAGF NIPSINIESN LWSLNISSPG VSPATLLESP VFLPNPLLSP TTGKLSSLPS  120
DHKAKDEFFD PTIIGVEPDA SQAYEQTHNI GLGGAPADDG YNWRKYGQKL VKGSEYPRSY  180
YKCTHPNCEV KKKVERSREG HITEIIYTKT HNHPKPPPNR RSGIGSSGTC NDMQIDGTEQ  240
QGLAGTNENI EWTSPVRNYG SMQVQNRTQF GYGDAAFFKD EEDRTSDMSV SMGYDGEADE  300
SEPKRRKLEA YAMEMSGSTR ANRAPKVVVK TTTDVDILED GYRWRKYGQK VVKGNPNPRS  360
YYKCTATGCI VTKHVERASD DLTSVLTTYI GKHTHEVPAA RNSSSHMSSG SSGTIQGSLP  420
TQTQNYHVHY PEPHSRSEGL VTANSSLFDF QPSMRPPWAG FSVYGGETEL LGLSISGLAI  480
GQERFSMPAT GDPAGLMLQL PAEPKLEQVS QQELGFSRSS LIYRDTSSLP QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29158399878Probable WRKY transcription factor 4
2lex_A1e-29158399878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618888.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A0D3A6L90.0A0A0D3A6L9_BRAOL; Uncharacterized protein
STRINGBo1g045230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]