PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 515aa MW: 55781.1 Da PI: 8.2027 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.8e-30 | 217 | 276 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+ XP_013618884.1 217 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 276 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 202 | 278 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-27 | 210 | 278 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.69 | 212 | 278 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 217 | 277 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-27 | 218 | 276 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MEVLLKLPTS DSLLTVKDLG SAQIHEAIKG DGDHQELESA KAEMSEVKEE NEKLKGMLKR 60 IENDYKSLKL RFFDVFQQEP SNKPTQDQKV VDLRTELSSL DQEHELVSLS LGRRSSSPSD 120 NTSKKEEKAD AITKEVNSDK KLNEVGLTLG FNNGNDREPN KSLSIVDSLE EASKVTGKRS 180 SPSPPASGGD ADGEAGQQNN VKRARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY 240 YRCTVAPGCP VRKQVQRCAE DMSILITTYE GTHSHPLPLS ATTMASTTSA AASMLLSGSS 300 SSSAAKIIGN NLYDSSRFIN NSKSFYAPTL HPPLHPTVTL DLTAPQHSSS TSLPSLNFNK 360 FSNSFQRFPS TSLNFSSSSS YTPYPYNNVQ FGPSNLGKPV QNSQSLTETL TKALTSDPSF 420 HLVIAAAISS MVGSNGEQHG PRPSISNSIQ QTTETNNKKG CGGYFNSLLT SNIIANNQTG 480 AFLDQPSSQL PPLSMFKNPS SSSSTASFVN KDEKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 204 | 278 | 1 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618884.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189232 | 0.0 | AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618884.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 0.0 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | A0A0D3AJ56 | 0.0 | A0A0D3AJ56_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g012390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 0.0 | WRKY DNA-binding protein 72 |