PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618746.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 205aa    MW: 23479.8 Da    PI: 9.6202
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1869124156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rrk+ ++tkeq + Le+ F ++++++ +++ eLA+ l+L++rqV vWFqNrRa+ k
  XP_013618746.1  69 RRKKLRLTKEQSHLLEDSFIQKHTLTSKQKLELATFLKLSQRQVEVWFQNRRARSK 124
                     79999*************************************************98 PP
2HD-ZIP_I/II107.31.1e-3470158190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+keq++lLE+sF ++++L++++K ela+ L+l++rqv+vWFqnrRAR k+k++E+++++Lkr++ +lke+n+ L+keveeLr +
  XP_013618746.1  70 RKKLRLTKEQSHLLEDSFIQKHTLTSKQKLELATFLKLSQRQVEVWFQNRRARSKLKHTEMECKYLKRCFGSLKEQNRLLQKEVEELR-A 158
                     69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-1855127IPR009057Homeodomain-like
SuperFamilySSF466891.88E-1956125IPR009057Homeodomain-like
PROSITE profilePS5007117.28166126IPR001356Homeobox domain
SMARTSM003891.0E-1668130IPR001356Homeobox domain
CDDcd000861.92E-1469127No hitNo description
PfamPF000461.9E-1569124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PfamPF021831.9E-7126159IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-14126169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MALSPKSSSL ELSISLPSFS QLSSHPSSGE HMVRDLDINQ TPKTEDREWM MIAAEPYANE  60
EDSNSCGRRR KKLRLTKEQS HLLEDSFIQK HTLTSKQKLE LATFLKLSQR QVEVWFQNRR  120
ARSKLKHTEM ECKYLKRCFG SLKEQNRLLQ KEVEELRALN AMPASILTMC PRCERATDAT  180
DNAVKEGTAT RSQSRRTISS SSSLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674GRRRKKLRL
26773RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618746.11e-149PREDICTED: homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM76e-89ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A0D3APS31e-124A0A0D3APS3_BRAOL; Uncharacterized protein
STRINGBo2g069680.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.13e-86homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]