PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 591aa MW: 66442.3 Da PI: 6.5585 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.5 | 1e-29 | 123 | 208 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk++eg+ +r ++ +++++f+qlea XP_013618687.1 123 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTREGKAGR--QDGKHYRFFRQLEA 208 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 55 | 2.1e-17 | 427 | 505 | 1 | 79 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstc 79 +W +qe+ +L+e+r++m++++++ g+++ lWeev+ km++ gf ++s+ Ckekwe++++ kk+++ +k++ ss+c XP_013618687.1 427 CWNEQEITKLMEIRTSMDSAFQEilgGCSDDFLWEEVAGKMAQLGFdQKSALLCKEKWEWISNGKKKMNKKRKDN----SSSC 505 7*********************98889*******************778**************999988888875....3334 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.98 | 122 | 181 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.1E-20 | 123 | 209 | No hit | No description |
CDD | cd12203 | 8.30E-20 | 123 | 188 | No hit | No description |
Pfam | PF13837 | 1.6E-12 | 426 | 509 | No hit | No description |
CDD | cd12203 | 6.94E-16 | 426 | 490 | No hit | No description |
PROSITE profile | PS50090 | 5.529 | 428 | 485 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MDDHHPQYGV PELRQLMQGG GRTTTTESPS TSSHFPSGFF GFNLAPAAPP PPPQHHRLHQ 60 FTTDQEMGFL PRGIHGLGGS SSTAGNNSNL NASSSGGAVG FSGFLDGGGI GGGGGGDGGG 120 TGRWPRQETL TLLEIRSRLD HKFKEANQKG PLWDEVSRIM SEEHGYQRSG KKCREKFENL 180 YKYYKKTREG KAGRQDGKHY RFFRQLEALY GDSNNLVPCP SHNTQFMSNA LHGFHTQNAM 240 NDVTTTTSNI HNVDSVHGFH RQSLSLSNNY NSSELELVTS SSEGNDSSSR RKKRSWKNKI 300 KEFIDVNMKR LMERQDVWLE KLTKVIEDKE EQRMMKEEEW RKSEAARIDK EHLFWSKERE 360 RMEARDVAVI EALQFLTGKT LIKPLCSSPE ERINGNNEIQ KNSENQNENE SDQTMTNNVS 420 IEGSGSCWNE QEITKLMEIR TSMDSAFQEI LGGCSDDFLW EEVAGKMAQL GFDQKSALLC 480 KEKWEWISNG KKKMNKKRKD NSSSCGVYYP TTEENTIYNN QESGYNDNDQ RHQMNEQGNV 540 GSSTSNVNAA AGNPSGAMAA NTNCFPFFMG DGDQNLWESY GLRLNKGENH E |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. | |||||
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618687.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618687.1 | 0.0 | PREDICTED: trihelix transcription factor PTL isoform X1 | ||||
Swissprot | Q9LZS0 | 0.0 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A0D3AHN1 | 0.0 | A0A0D3AHN1_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g004170.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2767 | 28 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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