PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 35938.6 Da PI: 9.2966 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.6 | 9.5e-57 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_013618671.1 17 LPPGFRFHPTDEELITHYLHKKVLNIDFSA-KTIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFR- 109 79**************************99.88***************99999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg+kt+Wvmheyrl XP_013618671.1 110 GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 142 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-65 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-30 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
METFGGFHKE DDEQMVLPPG FRFHPTDEEL ITHYLHKKVL NIDFSAKTIG EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYRGRAPKG QKTNWVMHEY RLDGKLSPHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI 180 QIGSYGGSSL PPLTDSSPYN NDKTKNDPTY VPCFSNQTET RGTLLNYFSN NPALSSIPLY 240 QPHSLHVSDP VLAQEQSVSQ GMFENNRRQS FKTLSISQET GVSNTDIEFG RKAFDHQEVP 300 SSSTVPVDLE PFWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-58 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-58 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-58 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-58 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-58 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-58 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-58 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618671.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966757 | 0.0 | KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618671.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A0D3AI43 | 0.0 | A0A0D3AI43_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g008760.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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