PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 259aa MW: 28956.4 Da PI: 9.2706 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.2e-31 | 35 | 87 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ++R XP_013618544.1 35 PRLRWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMHR 87 8***************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.119 | 31 | 91 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-29 | 31 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-14 | 35 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-22 | 35 | 87 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-8 | 36 | 87 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGKAAGRNGN ENYNGVGFNG QRGGGVRPYV RSPVPRLRWT PDLHRCFVNA VDMLGGQHRA 60 TPKLVLKMMD VKGLTISHVK SHLQMHRGSK LTLGKPEESS SSSIRRRQDT EEDNLHDNLS 120 LHTRNDCLLG FHSFPLSSHS SLRGGRKKEQ TSESSGDDDA DFLHTMNMKK TKETTMFRSH 180 HFHKKTEKEK NTWQEHEEEA DLSLSLSLNH HHWRSNGSSV SDTSEAVSTC SAPFIFKDCL 240 GSSPKIDLNL NLSISLLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618544.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618544.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
Swissprot | Q700D9 | 2e-75 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0D3AVE0 | 0.0 | A0A0D3AVE0_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g134900.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 2e-78 | G2-like family protein |