PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 37257.1 Da PI: 9.1961 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.4 | 1.9e-55 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd +k+ePw+Lp +k +ekewyfF+ rdkky+tg r+nratk+gyWkatgkdke+++ XP_013618540.1 16 LPPGFRFHPTDEELITQYLHKKVLDISFSA-KAIGEVDFNKSEPWELPWIAKMGEKEWYFFCARDKKYPTGLRTNRATKAGYWKATGKDKEIYR- 108 79**************************99.88***************7778899***************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkg+kt+Wvmhe+rle XP_013618540.1 109 GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEFRLE 142 999****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-62 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.63 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
METFCEFQKE EEQIDLPPGF RFHPTDEELI TQYLHKKVLD ISFSAKAIGE VDFNKSEPWE 60 LPWIAKMGEK EWYFFCARDK KYPTGLRTNR ATKAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEFR LEGKLSAHNL PQTAKNEWVI CRVFQKNAGG KKIPISSLIR 180 IGSLGTGFNP SHFPHLTDNS SYNDKTKTEP VYVPCFSNQT DQARRNTLNG FSNTVLNSIQ 240 ADIFQRIPLY QSPMLAQERS ALQAMIDNNT RQSLKAMSVS QETAVSTDMN TDTSSDFEYG 300 KRRLNAQEDP SSSTGLVELE PFWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966745 | 0.0 | KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618540.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 0.0 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0D3AY74 | 0.0 | A0A0D3AY74_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g161570.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 0.0 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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